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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [725 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
2 | b | B 1 (B) | polymer(polydeoxyribonucleotide) [12 base] | DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*GP*AP*A)-3') | 95N(K) 131L(N) 134D(Y) 150E(N) 151L 152S 154I(S) 155Q(H) 173K(R) 174N(V) 176Y(F) 178A(D) 182Y 183F(Y) 184N(K) 204E(T) 205L(H) 207S 209S(K) 210F(Y) 228F(L) 231N(Y) 250L(V) 252D 258P(R) 264P 265F(N) 291Y(G) 293N(V) 295S(K) 315V 319E(S) 320F(E) 341I(K) 343D(N) 345S 346F (identity: 24.3 %/34.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3wph_A_1 identity=34.3% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQ----TVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130 :** * * * ** * * * * * * * * * ** ** * * * ** * **: 3wph_A_1 13:PCELKXXG---LVDCNWLFLKSVPRFXXXASCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWN--CPPTGXXXXXXSCHMTIEPRTFLAMRTLEEL: 107 SecStr :TSEE -- ---EEE TTS SS --- TT EEE TT EE TTTTGGGTT SEEE TTS--B ------ EE TTTGGG TT EE: ExpBur :ebeee--e---bbebbebebeebbee---eebeebeebbbbebebeebeeebbeebeebebbbbeeb--bebee------ebebeeeeebbeebeebeeb: Contact : b queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCE-KTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229 : * * * ** ** *** ** * * * *** * * * * *** * * ** ** ** * : 3wph_A_1 108:NLSYNGITTVPR-LPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSQLTHLSLKYNNLTKVPRQLPPSLEYLLV: 206 SecStr :E SB SS - TT EEE TTS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS SS SS TT SEEE : ExpBur :ebbebbbeebbe-bbeebbebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeeebbeebeebbebbbeebebeebbeebbeebeebeb: Contact :b b bbb bb bb b b bbb bb b bb b queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIAS: 329 :* * ** * * ** *** ** ** ** * * * * * * * * ** * ** * **** * * * : 3wph_A_1 207:SYNLIVKLGPEDLAQLTSLRVLDVGGNCRRCDHAPNPCIEC-GQKSLHLHPETFHHLSHLEGLVLKDSSLHTLNSSWFQGLVQLSVLDLSENFLYESITH: 305 SecStr : SS EE GGGGTT TT SEEE TTSSB TT SS B -SSSS EE TTTTTT SS EEE SS S GGGGTT TT EEE TTSS HHHHHH: ExpBur :bbbebeebbeebbeebeebebbbbbbbbebbeeeeeeeeeb-eeeebebeeebbeebeebebbbbebbbbeebeeebbebbeebeebbbbebebeebbbe: Contact : b b b b bb b b b b bb queryA 330:GAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENR: 429 : * ** * ***** * * ** * * * * * ** * * * *** * * * * ** **: 3wph_A_1 306:TNAFQNLTRLRKLNLSFNYXXXXXXARLHLASSFKNLVSLQELNMNGIFFRLLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFVDLSDNR: 405 SecStr : TTTT S EEE TT ------ GGGGG TT EEE TT SEE TTTSGGGTT TT EEE SS EE GGGGGSSSS EEE SS : ExpBur :bebbeebeebeebebbebe------eebebbebbeebebbebbbbbbbebebbbeebbeebbebeebbbbbbbebebeebebbbbeebeebeebbbbebe: Contact : b b bb queryA 430:IS-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSA: 528 :** * * * *** * * * * * ** ** ** ** * * : 3wph_A_1 406:ISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDR------CKNFKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVNGSQFLP: 499 SecStr : S ----------------------------------- ------ TTTS EEE TTS SS GGGGTT TT EEE TTS B S TTTT: ExpBur :beeeee-----------------------------------eee------beeeebbbebbebebeebeeebbeebeebebbbbbebebebebebebbeb: queryA 529:IPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDD: 628 : *** * ** ** * ******* * * * * * * ** * * * * * * **** * * : 3wph_A_1 500:LTNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSXXXXXXGIGHQFSFVTHLSMLQSLSLAHNDIHTRVSSH-LNSNSVRFLDFSGNGMGRMW-DEG: 597 SecStr : TT EEE SS B TTTTTT TT EEE TT ------ S TTGGGGG TT EEE TT TT S - BSS EEE TTS HHHHH-TTT: ExpBur :beebbbbbbbebebebeeeebbebbeebebbbbbebe------eeeebbbbbeebeebebbbbbebeeeeebbee-bebebbeebbbbebbbbebb-eee: queryA 629:NRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLP: 728 : * * ** * **** * * *** ** * ** * ***** * * ** *** ** * ** * * * * * : 3wph_A_1 598:GLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTQGTLPNGTLLQKLDVSSNSIVSVV: 697 SecStr :TTTTTTTTTBTT EEE TTS S HHHHHTS TT SEEE TTS GGGGGG TT EEE TTS B SS TT EEE TTS B : ExpBur :eebbebbebbeebeebebbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebeebeeeebbeebebeebebbebebeebe: queryA 729:SGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVD-VICASPGDQRGKSIVSLELTTC: 822 : * ** ** * *** * * * ** * * * * * * * *** * ** * *: 3wph_A_1 698:PAFFALAVELKEVNLSHNILKTVDRSWF-GPIVMQLTVLDVRSNPLHCACGAAFVDLLLE--VQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 789 SecStr :TTTTTT TT EEE TTS S GGGT-GGGGGT SEEE TT EE SS SHHHHHHH--TGGGSTTHHHHSBEEESTTTBTSBTTSS STT : ExpBur :eebbeebeebeebebbebebeebeeebb-eebbeebeebbbeebebebeeebebbebbbe--beeebebbbbebebeeeeebeeebbbeeebeee: |