Protein Model on 3wpc_A_1_B_1
(TEMPLATE: 
3wpc
)Protein Model on 3wpc_A_1_B_1
(TEMPLATE: 3wpc
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [747 aa] | Toll-like receptor 9 :Q2EEY0_HORSE | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [749 aa] | Toll-like receptor 9 :Q2EEY0_HORSE | 107P 108G(M) 109I(H) 183F(Y) 184N(K) 262N(H) 264P(R) 265F(N) 266P 346F 403I(M) 405F 427E(D) 490L(R) 492S(N) 494F(V) 514A(H) 515N 516S 518A(S) 541R(K) 566H(Q) 569R(S) 570I(M) 571A(R) 572G 599L(R) 622I(Q) 625N(A) 626D(E) 630R(L) 653H(T) 654I(L) 678F 725S(I) 747L(A) 749K(R) 804A(G) 805S 806P 807G 810R(Q) (identity: 26.2 %/35.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3wpc_A_1 identity=35.9% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQTVGKY----VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
:** * * ** ** * * * * * * * ** * ** * * * ** * **:
3wpc_A_1 13:PCELQPHG---LVNCNWLFLKSVPHFSAAAPRDNVTSLSLLSNRIHHLHDSDFAQLSNLQKLNLKWN--CPPAGLSPMHFPCHMTIEPNTFLAVPTLEEL: 107
SecStr :TSEEETTT---EEE TTS SS TT GGG SEEE TT EE TTSSTT TT EEE TTS--B TTTSTT EE TTTTTT TT EE:
ExpBur :ebeeeeee---ebebeeeebeebbebeeebebeebebbbbebbebeebeeebbeebeebeebebeeb--bbbeebbeeeeebebeeeeebbeebeebeeb:
Contact : bbb
queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
: * * * ** ** * * ** * * ** *** * * * ** *** * * ** ** ** * *:
3wpc_A_1 108:NLSYNGITTVPA-LPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVAPGALLGLGNLTHLSLKYNNLTTVPRSLPPSLEYLLL: 206
SecStr :E SB SS - TT EEE TTS EE TTTSTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS SS SS TT SEEE :
ExpBur :bbbbbbbeebbe-bbeebbbbebbbbebbebeeebbeebeebebbebbbbbbeebeeeeebebeeebbeebeebbbbbbeebebeebbeebbeebeebbb:
Contact : bb
queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGG-ASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328
:* * ** * * ** *** ** * *** * * * * * * * ** * ** * **** * * * :
3wpc_A_1 207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFPQLHSDTFS--HLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLYDCIT: 304
SecStr :TTS EE GGGGTT TT SEEE TTSS GGG SS TT EE TTTTT--T TT EEE SS S GGGTTT TT EEE TTSS TTHHH:
ExpBur :bbbebbebbbebbeebeebeebbbbbbbbbbeeeeeeeeebeeeeeeeeeebbe--ebeebebbbbebbbbeebeeebbeebeebbebbbbbbbbbebbe:
Contact : b bbb
queryA 329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428
: * * * ***** * * * **** * * * * *** ** * * *** * * * * * ** *:
3wpc_A_1 305:KTKAFQGLAQLRRLNLSFNYHKKVSFAHLTLAPSFGSLLSLQELDMHGIFFRSLSQKTLQPLARLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDN: 404
SecStr :H TTTT TT EEE TT SS BS GGGGG TT EEE TTS BSEE TTTTGGGTT TT EEE SS EE GGGGTT SS EEE SS:
ExpBur :ebebbeebeebeebebbbbbeeeeebeebebbebbebbebbeebbbbbbbbebbeeebbebbbebeebeebbbbebebeebebbbbeebeebebbbbbeb:
Contact : b b b b
queryA 429:RISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSA: 528
:*** * * * **** * * * * ** ** ** * * * :
3wpc_A_1 405:RISGAVEXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXEDFMPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSISQAVNGSQFVP: 498
SecStr : SS ------------------------------------- SS STTSS EEE SS SS GGGGTT TT SEEE TTS S TTTT:
ExpBur :ebebeee-------------------------------------eebbeebeebebbbbbbebebeebeeebbeebeebebbebbebebebebebebbee:
Contact : b b b bbb b
queryA 529:IPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDD: 628
: *** * ** *** ** ******* * ** * * * * * * ** * * * ** * **** * * *:
3wpc_A_1 499:LTSLQVLDLSHNKLDLYHGRSFTELPRLEALDLSYNSQPFSMRGVGHNLSFVAQLPTLRYLSLAHNGIHSRVSQ-QLCSTSLWALDFSGNSLSQMWAEGD: 597
SecStr : TT EEE SS TTTTTT TT EEE TT HHHHTSTT GGGGG TT EEE TTS SSS S- EESS EEE SS HHHHHTSTT:
ExpBur :beebbbbbbbebebebeeeebbebbeebebbbbbebeebbeeeeeebebebbeebeebebbbbbebebbeebbe-ebebebbebbbbbbbbbeebbeeee:
Contact : b b bbbb b b bb
queryA 629:NRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLP: 728
: * * ** * ***** *** *** ** * * * **** * * ** *** ** * * * * * * * :
3wpc_A_1 598:-LYLRFFQGLRSLIRLDLSQNRLHTLLPCTLGNLPKSLQLLRLRNNYLAFFNWSSLTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLDVSRNSIIFVV: 696
SecStr :-TTTTTTTEETT EEE SS S HHHHTTS TT EEE TTS S GGGGGGSTT EEE TTS EE SS S TT EEE TTS EE :
ExpBur :-ebeebbbbbeebebbbbbebebeebeeebbbbbbeebebbebeebebeebebebbeebeebebbbbbbbebebbbeeebbeebebeebebbebebeebe:
Contact : b bb b b
queryA 729:SGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVK--IPRLVD-VICASPGDQRGKSIVSLEL: 819
: ** * * ** * * * * * * ** * * * * * * * * * *** * ** *:
3wpc_A_1 697:PGFFALATRLRELNLSANALRTVEPSWFGFLAGS-LEVLDVSANPLHCACXAA----FVDFLLQVQAAVPGLPSRVKCGSPGQLQGRSIFAQDL: 785
SecStr :TTTTTT TT EEE SS S GGGGTT TT- SEEE S EE - H----HHHHHHHTGGGSTTHHHH BEEESGGGTTSBTTSS :
ExpBur :eebbeebeebeebebbebebeebebebbeeebee-beebbbbebebebee-ee----bbebbbebeebbebbbbebebebeeeeeeebbbeeee:
Contact : b b bbbb b
|
[assembly_id:1]
[help]