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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [601 aa] | CD180 antigen :CD180_MOUSE | |
2 | b | B 1 (C) | polymer(polypeptide(L)) [139 aa] | Lymphocyte antigen 86 :LY86_MOUSE | 230S 231N(F) 252D 254S(T) 259R 295S(T) 296S(A) 321N(F) 323L(I) 324V(Q) 343D(Y) 346F(S) 375R(Q) 376G(N) 447F 448Q(E) 449R(D) 489S(Q) 490L(K) 513S(T) 514A 571A(K) (identity: 22.7 %/30.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3t6q_A_1 identity=30.0% |
queryA 212:SLSHVPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP: 311 : * * ** * * * * * ***** *** ** * ** * * * * : 3t6q_A_1 23:GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT----RC-------------QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK: 105 SecStr : SS TTS TT EEE TT SEE TTTSTT TT SEEE T----T ------------- EE TTTTTT TT EEE TT SEE TTTTSS T: ExpBur :ebeebbeebeeebebbbbbebebeebeeebbeebeebeebbbb----eb-------------ebeebeeebbebbeebebbbbbbbebeebbeebbbbbe: Contact : bb b b b bb queryA 312:HLKVLDLEFNYLVGEIASGAFLTM--LPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQI: 409 : ** * * * * ** * * * * * * * * * * * * *** ** * * *: 3t6q_A_1 106:ALKHL----FFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-----IKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGI: 194 SecStr :T EE----E TTS S GGGS TT TT EEE SS ----- TT T-T EEE SS EE HHHHHTTTT SEE-EE TT EE: ExpBur :ebeeb----ebeebebeebebbbbeebeebebbebbebebee-----bebeeebebe-ebeebbbeebebeebbeebbeebeebeebe-bbbbebebebb: Contact : b bb b b bb queryA 410:DFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANS---SSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPD: 506 : * * * * * * * * * * * * * : 3t6q_A_1 195:EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED------MDDEDISP---------AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG: 279 SecStr : TTTTTT EEEEEE TT S HHHHHHHTTT EEEEEE TT------S G---------GGGGGGGGSEEEEEE TT SS TTTTTT TT: ExpBur :eeebbeebebeebebbbbeebeebbebbeebebeebebbbeee------eeeeebee---------ebbebbeebebebbbbbebebeebeeebbebbee: Contact : b bbb bb queryA 507:IACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEF----IQNFTNLKVLNLSHNNIYTLTDK: 602 : * * * ** * * * * * * * * * * * * ** * ** * *** * * * : 3t6q_A_1 280:LQELDLTATHLSELPSG--LVGLSTLKKLVLSANK--FEN---LCQISASNFPSLTH----LSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDC: 367 SecStr : SEEE TTS S SS-- S TT EEE TT -- SB---GGGG GGG TT SE----EE S SS B SSTTTT TT EEE SS E-EEE: ExpBur :beebebebbebeebeee--beebeebeebebbebe--bee---beebbbebbeebee----bebeebeeebebbebbbeebeebeebebbebebeb-eeb: Contact : bb b queryA 603:YNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGN---: 698 : ** * * * * ** * *** *** * ** * * * * * * * * ** : 3t6q_A_1 368:CNLQLRNLSHL----QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP: 462 SecStr :STTTTTT TT ---- EEE S S EEE TTTTTT TT SEEE TT EE TT TTTT TT- EEE TT BTT TTTTTT TT EEE TT B G: ExpBur :beebbeebeeb----eebebbebebbebeeebbeebeebeebebbebebeeeeeebbbeebee-beebebbebebebbeeebbeebeebeebbbebbebe: queryA 699:--------------KLLFLTDSLSDFTS-------SLRTL---LLSHNRISHLPSGFLSEVSSLK--HLDLSSNLLKTINKSALETKTTTKLSMLELHGN: 772 : * * * * * ** ***** * * ** * * ** * * * * *: 3t6q_A_1 463:KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT---SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR--TINLRQN: 557 SecStr :GGEE SS GGGG TT EEE TTS EE TTTTTT TT EEE SS ---GGGGGGGTT S EEE SS GGGHHHHHTSS--EEE TT : ExpBur :ebebeeebbbeebeebeebbbbebebeebeeebbeebeebeebbbbebebe---bebbebbeebeebebbbbbbebeebeeebbebbeebe--bbbbeeb: queryA 773:PFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELT: 820 :* *** * * * * * * * ** * : 3t6q_A_1 558:PLDCTCSNIYFLEWYKENMQ-KLEDTEDTLCENPPLLRGVRLSDVTLS: 604 SecStr : EE SGGGHHHHHHHHH GG-GEE GGG BEEESGGGTT BGGG : ExpBur :ebbbeeebbebbebbeebee-ebeebeebebeeeeeeeeeebeebeee: |