Protein Model on 2z63_A_1_B_1 (TEMPLATE: 2z63 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [570 aa] Toll-like receptor 4, Variable lymphocyte receptor B :TLR4_HUMAN:Q4G1L2_EPTBU
2 b B 1 (B) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 502E(N) 505P(T) 506D(N) (identity: 0.0 %/31.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2z63_A_1 identity=31.5%
queryA       216:VPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHL-K: 314
                : *  ** *   * **           *     *  ****    **                 *   * * *  *  * *            *     * *:
2z63_A_1      22:IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS----RC-------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK: 104
SecStr          :  SSS SS  EEE  S    EE TTTTTT SS  EEE T----T -------------   EE TTTTTT TT  EEE TT    EE TTTTTT TT  E:    
ExpBur          :ebeebeeebeebebbebbbeebeeebbebbeebeebbbb----eb-------------ebebbeebbbeebeebeebebbbbebeeebebbbeebeebee:    

queryA       315:VLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLG----INFIKQID: 410
                :    * *    *         *  *  *    * *     *       ** *  *  * *     *     *   * * * *           ***    :
2z63_A_1     105:LVAVETNLASLENFP---IGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA: 196
SecStr          :EE TTS    STT S--- TT TT  EEE  SS  -----      GGGGG TT  EEE TTS   EE GGGGHHHHT TT   EEE TT    EE TTT:    
ExpBur          :bbbbebebeebeebb---bbebeebeebbbbebeb-----eebebbebbeebeebeebbbbebebeebeeebbebbeebeebebbbbbbebebeebeeeb:    

queryA       411:FK--------LFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQC--------AAYGKALDLSLNSIF: 494
                :**        *  **  *              *   *  *            *    **    *   *        *         **   **  *  * :
2z63_A_1     197:FKEIRLHKLTLRNNFDSLNVM-----------KTCIQGLAG-------LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY---LDYYLDDII: 275
SecStr          :TTT EEEEEEEES  S TTHH-----------HHHHHTTTT------- EEEEEEEEE    SS EE  TTTTGGGGGSEEEEEEEEE---TTEEES ST:    
ExpBur          :beebebeebbbebbbeebeeb-----------eebbebbee-------bebebbbbbbeebeeeeeebeeebbeebeebebeebebbb---eebebebbe:    

queryA       495:FIGPNQFENLPDIACLNLSANSNAQV-------------LSGTEFSAIPHVKYLDLTNNRLDF-----DNASALTELSDLEVLDLSYNSHYFRIAGVTHH: 576
                :      *  *       *       *             *    *   *  *   *   ** *      **     *  ** **** *   *   *    :
2z63_A_1     276:----DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL--KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK--GCCSQ: 367
SecStr          :----TTTGGGTT SEEEEES EE S  B  S    SEEEEES B SS  B B SS -- EEEEES BS  B    B TT  EEE  SS  BEE--EEEEH:    
ExpBur          :----ebbebbbebbbbbbbbbbbeebeebeeebebeebbbbebebeebbebebeeb--eebbbbebeeeeebeebebeebebbbbbebebebe--ebbbe:    
Contact         :       b  bb                                                                                        

queryA       577:LEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNML: 676
                :  *    * ** * ** *   *      *    *  * *    *            * *  * **  ** *        *  *  *              :
2z63_A_1     368:SDF--GTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQM------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------------: 446
SecStr          :HHH--T S   EEE  S SEEEEEEEE-ET TT  EEE TTSEEES ------TTS TTTT TT  EEE TTS  EE  TTTTTT TT------------:    
ExpBur          :ebb--ebeebeebbbbebeebebeeeb-ebbeebebbbbeebbbeeb------eeeebbeebeebeebbbbebebebeeebbbebbee------------:    

queryA       677:KFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLL---LSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNP: 773
                :             ** *   **   *    * *    ** *    **      *        ***  *   ** **          *   *    ** **:
2z63_A_1     447:-------------LEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS--LQKIWLHTNP: 529
SecStr          :-------------  EEE TT E--EGGGEE S  TT TT  EEE TTS   EE TTTTTT TT  EEE  SS  S   TTTTTT TT--  EEE  SS :    
ExpBur          :-------------bebbebbebb--beeeebbebbeebeebeebbbbebebeebbeebbeebeebebbbbbebebebbbebbbeebee--beebebeebe:    

queryA       774:FECTCDIGDF-RRWMDEH: 790
                :  * *   *   **    :
2z63_A_1     530:WDCSCPRIDYLSRWLNKN: 547
SecStr          :B   TTTTHHHHHHHHHT:    
ExpBur          :beeeeeebebbbebbeeb:

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