Protein Model on 6hb4_J_1_L_1
(TEMPLATE: 
6hb4
)Protein Model on 6hb4_J_1_L_1
(TEMPLATE: 6hb4
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | J 1 (J) | polymer(polypeptide(L)) [193 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
| 2 | b | L 1 (L) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*TP*CP*TP*GP*CP*AP*CP*AP*G)-3') | 14S 15S 16Y 17A(L) 39S(T) 42S(I) 43K(R) 46S(A) 49W 50K(R) 87K 96K 97R 99P(R) 103F(N) 106C(V) 107S(A) 110R(F) 118P 126A(L) (identity: 40.0 %/28.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6hb4_J_1 identity=28.6% |
queryA 6:PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KGET: 85
:**** *** * * *** * ** * * * * * * * *:
6hb4_J_1 9:PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT: 103
SecStr : --- HHHHHHHHHHHHHHHHSTTS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHH:
ExpBur :eeee---eebeeebbeebeeebeeeeeeeee--eebeeebbeebeebeeeebeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeeeee:
Contact : bbbb b bb b bb b bb
queryA 86:KKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK----GKPDAAKKGV: 175
:*** **** ** * ** * * * * * * * * * * * :
6hb4_J_1 104:KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTI: 194
SecStr :HHHHHHHTT HHHHHHHHHGGGS SSH----HHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT GGGS S :
ExpBur :eeeeeeebeebeeeeebeeebeeeeeeebeeeee----eebeeebeeebeebeeeeeeebeeebeebeebeeeebeebbeebeeeeeeebeeeee:
Contact : b bb b b bb b b b
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[assembly_id:4]
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