Protein Model on 5jgh_J_1_K_1
(TEMPLATE: 
5jgh
)Protein Model on 5jgh_J_1_K_1
(TEMPLATE: 5jgh
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | J 1 (J) | polymer(polypeptide(L)) [151 aa] | ARS-binding factor 2, mitochondrial :ABF2_YEAST | |
| 2 | b | K 1 (K) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*A)-3') | 97R(K) 101A(P) 102F 103F(I) 123G(L) 126A(M) 127K 130G 133W 134N(Q) 152K(I) 155Y 159I (identity: 46.2 %/30.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jgh_J_1 identity=30.3% |
queryA 1:MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPS: 100
: * ** * * * * * * * * ** * * * * * * * ** * ** * :
5jgh_J_1 18:LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQK-----------AKKEFDEKLPPKKPAG: 101
SecStr :HHHTS --- HHHHHHHHHHHHHHHHST--TS HHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHTS :
ExpBur :eeeebeeee---eebbebbbeeeeeebeeeee--eeeeeebeeebeeebeebeeeebeebeeeeeeeeeebee-----------eeeeeeeebeeeeeee:
Contact : b
queryA 101:AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK: 165
: * * * ** * * * * * * * * * * * * :
5jgh_J_1 102:PFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR: 159
SecStr :HHHHHHHHHHHHHHHH TTS HHHHHHHHHHHHHHS HHHHHHH-------HHHHHHHHHHHTTS:
ExpBur :eeeebbeebeeebeeeeeeeeeeebeeebeeebeebeeeebeeb-------eeeeeeeeeebeee:
Contact :bbb b bb b bb b b b
|
[assembly_id:2]
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