Protein Model on 5jgh_J_1_H_1
(TEMPLATE: 
5jgh
)Protein Model on 5jgh_J_1_H_1
(TEMPLATE: 5jgh
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | J 1 (J) | polymer(polypeptide(L)) [151 aa] | ARS-binding factor 2, mitochondrial :ABF2_YEAST | |
| 2 | b | H 1 (H) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*A)-3') | 8K(R) 14S 16Y 17A(F) 39S(A) 42S 43K 46S(G) 49W 50K(Q) 64A(R) 68K(Y) 72E(Q) 86K (identity: 42.9 %/30.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jgh_J_1 identity=30.3% |
queryA 1:MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPS: 100
: * ** * * * * * * * * ** * * * * * * * ** * ** * :
5jgh_J_1 18:LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQK-----------AKKEFDEKLPPKKPAG: 101
SecStr :HHHTS --- HHHHHHHHHHHHHHHHST--TS HHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHTS :
ExpBur :eeeebeeee---eebbebbbeeeeeebeeeee--eeeeeebeeebeeebeebeeeebeebeeeeeeeeeebee-----------eeeeeeeebeeeeeee:
Contact : b b bb b bb b bb b b b b
queryA 101:AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK: 165
: * * * ** * * * * * * * * * * * * :
5jgh_J_1 102:PFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR: 159
SecStr :HHHHHHHHHHHHHHHH TTS HHHHHHHHHHHHHHS HHHHHHH-------HHHHHHHHHHHTTS:
ExpBur :eeeebbeebeeebeeeeeeeeeeebeeebeeebeebeeeebeeb-------eeeeeeeeeebeee:
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[assembly_id:2]
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