Protein Model on 6cij_G_1_K_1 (TEMPLATE: 6cij )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(HMGB1_HUMAN) G 1 (N) polymer(polypeptide(L)) [133 aa] High mobility group protein B1 :HMGB1_HUMAN
2 b K 1 (M) polymer(polydeoxyribonucleotide) [41 base] DNA (41-MER) 14S 15S 16Y 38F 42S 46S 49W 86K 97R 103F 110R 122I (identity: 100.0 %/88.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6cij_G_1 identity=88.7%
queryA         9:PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSE: 108
                :******************************************    ********************           ***********************:
6cij_G_1       9:PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKXXXXKEKGKFEDMAKADKARYEREXXXXXXXXXXXKKKFKDPNAPKRPPSAFFLFCSE: 108
SecStr          :      TTHHHHHHHHHHHHHS TT TT SHHHHTTHHHHT ----   HHHHHHHHTTHHHHTT -----------     S  S      HHHHHHHH:    
ExpBur          :eeeeeeeeebbeeebbeeeeeeeeeeeeeeeebeeebeebee----eebeeebeebeeeeeebeee-----------eeeeeeeeeeeeeeebeebbbee:    
Contact         :     bbb                     b   b   b  b                                    b          b     b     

queryA       109:YRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD: 158
                :******************************  ******************:
6cij_G_1     109:YRPKIKGEHPGLSIGDVAKKLGEMWNNTAAXXKQPYEKKAAKLKEKYEKD: 158
SecStr          :HHHHHHHH TT  HHHHHHHHHHHHTTS  -- HHHHHHHHHHHHHHHH :    
ExpBur          :eeeeeeeeeeeeeeeebeebbbeeeeeeee--eeebeebbeeeeeeeeee:    
Contact         : b           b                                                                                      


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