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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(HMGB1_HUMAN) | G 1 (G) | polymer(polypeptide(L)) [156 aa] | ARS-binding factor 2, mitochondrial :ABF2_YEAST | |
2 | b | K 1 (K) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*A)-3') | 8K(R) 14S 16Y 17A(F) 38F(P) 39S(A) 42S 43K 46S(G) 49W 68K(Y) 72E(Q) 86K (identity: 46.2 %/30.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5jgh_G_1 identity=30.3% |
queryA 1:MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPS: 100 : * ** * * * * * * * * ** * * * * * * * ** * ** * : 5jgh_G_1 18:LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQK-----------AKKEFDEKLPPKKPAG: 101 SecStr :HHHTS --- HHHHHHHHHHHHHHHHSS--S HHHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHS : ExpBur :eeeebeeee---eebbebbbeeeeeebeeeee--eeeeeebeeebeeebeebeeeeeeebeeeeeeeeeebee-----------eeeeeeeebeeeeeee: Contact : b b bb bb bb b b b b b queryA 101:AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK: 165 : * * * ** * * * * * * * * * * * * : 5jgh_G_1 102:PFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR: 159 SecStr :HHHHHHHHHHHHHHHH TT HHHHHHHHHHHHHHS HHHHHHH-------HHHHHHHHHHHHHH: ExpBur :eeeebbeebeeebeeeeeeeeeeebeebbeeebeebeeeebeeb-------eeeeeeebeebeee: |