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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(HMGB1_HUMAN) | G 1 (G) | polymer(polypeptide(L)) [193 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
2 | b | I 1 (I) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*TP*CP*TP*GP*CP*AP*CP*AP*G)-3') | 14S 15S 16Y 39S(T) 42S(I) 43K(R) 46S(A) 49W 50K(R) 84E(M) 88K 96K 97R 99P(R) 103F(N) 106C(V) 107S(A) 110R(F) 118P 123G(Q) (identity: 40.0 %/28.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6hb4_G_1 identity=28.6% |
queryA 6:PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KGET: 85 :**** *** * * *** * ** * * * * * * * *: 6hb4_G_1 9:PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT: 103 SecStr : --- HHHHHHHHHHHHHHHH TTS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHH: ExpBur :eeeb---eebeeebbeebeeebeeeeeeeee--eebeeebbeebeeeeeeebeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeeeee: Contact : bbb b bb b bb b b queryA 86:KKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK----GKPDAAKKGV: 175 :*** **** ** * ** * * * * * * * * * * * : 6hb4_G_1 104:KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTI: 194 SecStr :HHHHHHHTT HHHHHHHHHTTT S SSH----HHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT GGGS S : ExpBur :eeeebeeeeebeeeeebeebbbeeeeeebeeeee----eebeeebeeebeebeeeeeeebeeebeebeebeeeebeebbeebeeeeeeebeeeee: Contact : b bb b b bb b b b |