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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(HMGB1_HUMAN) | E 1 (N) | polymer(polypeptide(L)) [117 aa] | HMGB1 A-B box :HMGB1_MOUSE | |
2 | b | K 1 (M) | polymer(polydeoxyribonucleotide) [39 base] | DNA chain M | 14S 16Y 38F 39S 42S 43K 46S 49W 103F 122I 126A (identity: 100.0 %/77.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5zdz_E_1 identity=77.6% |
queryA 11:GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYR: 110 :**************************************** *********************** **************: 5zdz_E_1 11:GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKXXXAKEKGKFEDMAKADKARYEREMKXXXXXXXXXXXXXXXXXXXXRPPSAFFLFCSEYR: 110 SecStr : HHHHHHHHHHHHHHHH TT HHHHHHHHHHHH --- HHHHHHHHHHHHHHHHHHHH -------------------- HHHHHHHHHH: ExpBur :eeeeeeebbeeebbeeeeeebeeeeeeeebbeeebeeeee---eeebeebeeebeebeebbeeeee--------------------eeeebeeebbeeeb: Contact : b b bb bb b b b queryA 111:PKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY: 144 :****** *************** ******: 5zdz_E_1 111:PKIKGEXXXXXIGDVAKKLGEMWNNTXXDDKQPY: 144 SecStr :HHHHH ----- HHHHHHHHHHHHH -- SHHH: ExpBur :eebeee-----eeeeeebbeeebeee--eeeeee: Contact : b b |