Protein Model on 5zdz_E_1_K_1
(TEMPLATE: 
5zdz
)Protein Model on 5zdz_E_1_K_1
(TEMPLATE: 5zdz
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | E 1 (N) | polymer(polypeptide(L)) [117 aa] | HMGB1 A-B box :HMGB1_MOUSE | |
| 2 | b | K 1 (M) | polymer(polydeoxyribonucleotide) [39 base] | DNA chain M | 14S 16Y 38F 39S 42S 43K 46S 49W 103F 122I 126A (identity: 100.0 %/77.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5zdz_E_1 identity=77.6% |
queryA 11:GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYR: 110
:**************************************** *********************** **************:
5zdz_E_1 11:GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKXXXAKEKGKFEDMAKADKARYEREMKXXXXXXXXXXXXXXXXXXXXRPPSAFFLFCSEYR: 110
SecStr : HHHHHHHHHHHHHHHH TT HHHHHHHHHHHH --- HHHHHHHHHHHHHHHHHHHH -------------------- HHHHHHHHHH:
ExpBur :eeeeeeebbeeebbeeeeeebeeeeeeeebbeeebeeeee---eeebeebeeebeebeebbeeeee--------------------eeeebeeebbeeeb:
Contact : b b bb bb b b b
queryA 111:PKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY: 144
:****** *************** ******:
5zdz_E_1 111:PKIKGEXXXXXIGDVAKKLGEMWNNTXXDDKQPY: 144
SecStr :HHHHH ----- HHHHHHHHHHHHH -- SHHH:
ExpBur :eebeee-----eeeeeebbeeebeee--eeeeee:
Contact : b b
|
[assembly_id:1]
[help]