Protein Model on 6erp_D_1_F_1
(TEMPLATE: 
6erp
)Protein Model on 6erp_D_1_F_1
(TEMPLATE: 6erp
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | D 1 (G) | polymer(polypeptide(L)) [192 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
| 2 | b | F 1 (I) | polymer(polydeoxyribonucleotide) [45 base] | Template DNA | 7K 8K 13M(V) 17A(L) 21Q(K) 24R(L) 28K 36V(T) 39S(T) 42S(I) 87K 90K(T) 97R 98P 100S 102F(Y) 103F(N) 123G(Q) 126A(L) 130G(K) 133W 152K(E) 155Y (identity: 39.1 %/29.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6erp_D_1 identity=29.3% |
queryA 4:GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KG: 83
: **** *** * * *** * ** * * * * * * * :
6erp_D_1 8:SSPKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKA: 102
SecStr :HS --- HHHHHHHHHHHHHHHH SSS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHH:
ExpBur :eebeeb---eeeeeebbeebeeebeeeeeeeee--eebeeebbeebeeeeeeeeeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeee:
Contact : bb b b b b b b b b b
queryA 84:ETKKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY: 162
: **** **** ** * ** * * * * * * * * * :
6erp_D_1 103:MTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW: 178
SecStr :HHHHHHHHHT HHHHHHHHHTTTS SSH----HHHHHHHHHHHHT TTTTHHHHHHHHHHHHHHHHHHHHH:
ExpBur :eeeeeeeeeeeeeeeeeebeebbbeeeeeebeeeee----eebeeebeeebeebeeeebeebeeebeebeeeeeeebeeb:
Contact : b b bb b bb b b b b b b
|
[assembly_id:2]
[help]