Protein Model on 7lbw_B_1_E_1
(TEMPLATE: 
7lbw
)Protein Model on 7lbw_B_1_E_1
(TEMPLATE: 7lbw
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [190 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
| 2 | b | E 1 (E) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP*AP*GP*CP*TP*CP*TP*TP*AP*G)-3') | 87K 88K 97R 98P 100S 101A 102F(Y) 123G(Q) 126A(L) 130G(K) 133W 134N(K) 152K(E) 155Y (identity: 57.1 %/29.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7lbw_B_1 identity=29.7% |
queryA 6:PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KGET: 85
:**** *** * * *** * ** * * * * * * * *:
7lbw_B_1 8:PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT: 102
SecStr : --- HHHHHHHHHHHHHHHH TTS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHH:
ExpBur :eeee---eeeeeebbeebeeebeeeeeeeee--eebeeebbeebeebeeeebeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeeeee:
Contact : b
queryA 86:KKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY: 162
:*** **** ** * ** * * * * * * * * * :
7lbw_B_1 103:KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW: 176
SecStr :HHHHHHHTT HHHHHHHHHSTTS SSH----HHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHHHHH:
ExpBur :eeeeeeeeeebeeeeebeebbbeeeeeebeeeee----eebeebbeeebeebeeeeeeebeeebeebeebbeeebeeb:
Contact : bb bb bbb b b b bb b b
|
[assembly_id:1]
[help]