Protein Model on 3tq6_B_1_E_1
(TEMPLATE: 
3tq6
)Protein Model on 3tq6_B_1_E_1
(TEMPLATE: 3tq6
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [190 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
| 2 | b | E 1 (E) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(*TP*AP*AP*CP*AP*GP*TP*CP*AP*CP*CP*CP*CP*CP*CP*AP*AP*CP*(BRU)P*AP*AP*C)-3') | 13M(V) 17A(L) 20V(S) 21Q(K) 24R(L) 28K 36V(T) 39S(T) 42S(I) 84E(M) 87K 88K 90K(T) 97R 98P 102F(Y) 123G(Q) 126A(L) 127K 130G(K) 133W 134N(K) 152K(E) 155Y (identity: 33.3 %/29.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3tq6_B_1 identity=29.7% |
queryA 6:PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KGET: 85
:**** *** * * *** * ** * * * * * * * *:
3tq6_B_1 10:PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT: 104
SecStr : --- HHHHHHHHHHHHHHHH TTS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHH:
ExpBur :beee---eebeeebbeebeeebeeeeeeeee--eebeeebbeebeeeeeeebeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeeeee:
Contact : b b bb b b b b b bb bb b
queryA 86:KKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY: 162
:*** **** ** * ** * * * * * * * * * :
3tq6_B_1 105:KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW: 178
SecStr :HHHHHHHTT HHHHHHHHHTTTSS SSH----HHHHHHHHHHHTT HHHHHHHHHHHHHHHHHHHHHHHHH:
ExpBur :eeeeeeeeeebeebeebeebbbeeeeeebeeeee----eebeebbeeebeebeeeeeeebeeebeebeeebeeebeeb:
Contact : bb b bb b b bb b bb b b
|
[assembly_id:2]
[help]