Protein Model on 4nnu_B_1_D_1
(TEMPLATE: 
4nnu
)Protein Model on 4nnu_B_1_D_1
(TEMPLATE: 4nnu
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [192 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
| 2 | b | D 1 (E) | polymer(polydeoxyribonucleotide) [22 base] | DNA1 | 13M(V) 17A(L) 20V(S) 21Q(K) 24R(L) 28K 36V(T) 84E(M) 87K 97R 100S 102F(Y) 106C(V) 123G(Q) 126A(L) 127K 130G(K) 133W 134N(K) 152K(E) 155Y 172K(R) 173K(R) 174G(T) (identity: 29.2 %/28.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4nnu_B_1 identity=28.6% |
queryA 6:PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KGET: 85
:**** *** * * *** * ** * * * * * * * *:
4nnu_B_1 43:PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT: 137
SecStr : --- HHHHHHHHHHHHHTTTSTTS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHH:
ExpBur :eeee---eeeeeebbeebeeebeeeeeeeee--eebeeebbeebeebeeeebeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeeeee:
Contact : b b bb b b b bb bb b
queryA 86:KKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK----GKPDAAKKGV: 175
:*** **** ** * ** * * * * * * * * * * * :
4nnu_B_1 138:KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTI: 228
SecStr :HHHHHHHTT HHHHHHHHSSSSSS SSH----HHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT GGGS S :
ExpBur :eeeebeeeeebeeeeebeebbeeeeeeebeeeee----eebeebbeeebeebeeeeeeebeeebeebeebbeeebeebbeebeeeeeeebeeeee:
Contact : b b b b b b bb b bb b b bbb
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[assembly_id:1]
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