Protein Model on 5jgh_A_1_F_1
(TEMPLATE: 
5jgh
)Protein Model on 5jgh_A_1_F_1
(TEMPLATE: 5jgh
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [156 aa] | ARS-binding factor 2, mitochondrial :ABF2_YEAST | |
| 2 | b | F 1 (F) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*AP*AP*TP*AP*AP*TP*AP*AP*A)-3') | 7K 8K(R) 9P 13M(T) 14S 17A(F) 20V(L) 21Q 24R 37N(R) 38F(P) (identity: 45.5 %/30.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jgh_A_1 identity=30.3% |
queryA 1:MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPS: 100
: * ** * * * * * * * * ** * * * * * * * ** * ** * :
5jgh_A_1 18:LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQK-----------AKKEFDEKLPPKKPAG: 101
SecStr :HHHTS --- HHHHHHHHHHHHHHHH T--TS HHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHS :
ExpBur :eeeebeeee---eebbebbbeeeeeebeeeee--eeeeeebeeebbeebeebeeeeeeebeeeeeeeeeebee-----------eeeeeeeebbeeebee:
Contact : bbb bb b bb b bb
queryA 101:AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK: 165
: * * * ** * * * * * * * * * * * * :
5jgh_A_1 102:PFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR: 159
SecStr :HHHHHHHHHHHHHHHH TT HHHHHHHHHHHHHHS HHHHHHH-------HHHHHHHHHHHHHH:
ExpBur :eeeebbeebeeebeeeeeeeeeeebeeebeeebeebeeeebeeb-------eeeeeebeeebeee:
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[assembly_id:1]
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