CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(HMGB1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [193 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
2 | b | D 1 (D) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP*AP*GP*CP*TP*CP*TP*TP*AP*G)-3') | 8K 14S 16Y 20V(S) 21Q(K) 39S(T) 42S(I) 46S(A) 49W 50K(R) 64A(Y) 68K(W) (identity: 33.3 %/28.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7lbw_A_1 identity=28.6% |
queryA 6:PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KGET: 85 :**** *** * * *** * ** * * * * * * * *: 7lbw_A_1 8:PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT: 102 SecStr : --- HHHHHHHHHHHHHHHH SSS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHH: ExpBur :eeee---eebeeebbeebbeebeeeeeebee--eebeeebbeebeebeeeebeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeeeee: Contact : b b b bb b b b bb b b bb queryA 86:KKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK----GKPDAAKKGV: 175 :*** **** ** * ** * * * * * * * * * * * : 7lbw_A_1 103:KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTI: 193 SecStr :HHHHHHHTT HHHHHHHHTSTTS SSH----HHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT GGGS SS : ExpBur :eeeeeeeeeebeeeeebeebbeeeeeeebeeeee----eeeeeebeeeeeebeeeeeeebeeebeebeebbeeebeebbeebeeeeeeebeeeee: |