Protein Model on 6erp_A_1_C_1
(TEMPLATE: 
6erp
)Protein Model on 6erp_A_1_C_1
(TEMPLATE: 6erp
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | A 1 (C) | polymer(polypeptide(L)) [192 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
| 2 | b | C 1 (E) | polymer(polydeoxyribonucleotide) [45 base] | Template DNA | 7K 8K 13M(V) 17A(L) 21Q(K) 24R(L) 36V(T) 88K 90K(T) 97R 98P 100S 102F(Y) 103F(N) 118P 123G(Q) 126A(L) 130G(K) 133W 152K(E) 155Y (identity: 42.9 %/29.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6erp_A_1 identity=29.3% |
queryA 4:GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KG: 83
: **** *** * * *** * ** * * * * * * * :
6erp_A_1 8:SSPKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKA: 102
SecStr :HS --- HHHHHHHHHHHHHHHH TTS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHH:
ExpBur :ebeeeb---eeeeeebbeebeeebeeeeeeeee--eebeeebbeebeeeeeeeeeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeee:
Contact : bb b b b b b b
queryA 84:ETKKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY: 162
: **** **** ** * ** * * * * * * * * * :
6erp_A_1 103:MTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW: 178
SecStr :HHHHHHHHHS HHHHHHHHHTTTS SSH----HHHHHHHHHHHHT TTTTHHHHHHHHHHHHHHHHHHHHH:
ExpBur :eeeeeeeeeeeebeeeeebeebbbeeeeeebeeeee----eebeeebeeebeebeeeebeebeeebeebeeeeeeebeeb:
Contact : b b bb b bb b b b b b b b
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[assembly_id:1]
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