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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(HMGB1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [194 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
2 | b | C 1 (C) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(*TP*AP*AP*CP*AP*GP*TP*CP*AP*CP*CP*CP*CP*CP*CP*AP*AP*CP*(BRU)P*AP*AP*C)-3') | 13M(V) 17A(L) 21Q(K) 24R(L) 28K 36V(T) 39S(T) 42S(I) 87K 88K 90K(T) 97R 98P 102F(Y) 103F(N) 123G(Q) 126A(L) 130G(K) 133W 152K(E) 155Y 172K(R) 173K(R) 174G(T) 175V(I) (identity: 28.0 %/28.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3tq6_A_1 identity=28.6% |
queryA 6:PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KGET: 85 :**** *** * * *** * ** * * * * * * * *: 3tq6_A_1 10:PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT: 104 SecStr : --- HHHHHHHHHHHHHHHH TTS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHH: ExpBur :eeee---eebeeebbeebeeebeeeeeeeee--eebeeebbeebeeeeeeebeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeeeee: Contact : b b b b b b b b b b queryA 86:KKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK----GKPDAAKKGV: 175 :*** **** ** * ** * * * * * * * * * * * : 3tq6_A_1 105:KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTI: 195 SecStr :HHHHHHHTT HHHHHHHHHTTTSS SSH----HHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT GGGS S : ExpBur :eeeebeeeeebeebeebeebbbeeeeeebeeeee----eebeeebeeebeebeeeeeeebeeebeebeebbeeebeebbeebeeeeeeebeeeee: Contact : bb b bb bb b b b b b b bbbb |