[pdbjlvh2]Protein Model on 6id4_E_1_Q

Protein Model on 6id4_E_1_Q_1 (TEMPLATE: 6id4 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	E 1 (E)	polymer(polypeptide(L)) [275 aa]	MHC class I antigen :F6IQY1_HUMAN
2	b		Q 1 (E)	non-polymer(PEG)	DI(HYDROXYETHYL)ETHER	35R 36P 38R 111A(D) 112G 113S (identity: 83.3 %/79.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6id4_E_1 identity=79.3%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** ************** ************* **** ** ***** **** **** ***      *  ** * ********** **** * * *:
6id4_E_1       2:GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYG: 101
SecStr          :  EEEEEEEEEE  TTTSS EEEEEEEETTEEEEEEETTSSS S EE STTTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT  TTS  EEEEEEE:    
ExpBur          :eebbbebebebebeeeeeeeebebebebbeeebbebbbebeeeebbeebebbeebeeebbeebbeebeebbeebeeebeebeeeeeeeeeeebebebebb:    
Contact         :             bb b                                                                        bbb        

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  ********** * *******  ********** * ****   *   *  ** ******  *****  *** *****    ***** ***********:
6id4_E_1     102:CDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 201
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSTTHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEEETTTEEE:    
ExpBur          :bbbbeeeeeeebbbebbbeeeebbbbeeebeebebeeebbeebeeeeeeeebbeebbebbebebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWK: 296
                :****************** ***  ******************************************* * **** :
6id4_E_1     202:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 276
SecStr          :EEEEEEEEBSS  EEEEEETTEE  TTEEE   EE SSS EEEEEEEEEETT GGGEEEEEE TTSSS EEE   :    
ExpBur          :bbbebebbbbbebebebbbeeeeeeeeeeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeeeeee:

Protein Model on 6id4_E_1_Q_1 (TEMPLATE: 6id4 )

Input Residue Numbers for Focused Sites