Protein Model on 4u1l_D_1_F_1
(TEMPLATE: 
4u1l
)Protein Model on 4u1l_D_1_F_1
(TEMPLATE: 4u1l
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HLAE_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [277 aa] | HLA class I histocompatibility antigen, B-81 alpha chain :1B81_HUMAN | |
| 2 | b | F 1 (F) | polymer(polypeptide(L)) [9 aa] | Protein Nef :Q90VG9_9HIV1 | 28Y 30H(Y) 80Y 83R 84E(N) 87S(I) 88A(Y) 90D(A) 91T(Q) 94I(T) 97V(E) 98N(S) 101T(N) 102L 105Y 120H(Y) 135E(N) 137F(Y) 145L(I) 164S 167K 171A 173E(V) 176H(Q) 177Q(L) 180Y 188W 192Y (identity: 39.3 %/78.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4u1l_D_1 identity=78.6% |
queryA 22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
:**** ** **************************** ****** ***** **** ***** * ** * ** **************** * *:
4u1l_D_1 2:GSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYG: 101
SecStr : EEEEEEEEEE TTT S EEEEEEEETTEEEEEEETTSSS EE SGGGGGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT SSS EEEEEEE:
ExpBur :eebebbbebebebbeeeeebebebebebbebebbebeeeeeeeebeeebebbeebeeebbeebbeebeeebeebeeebeebbeeeeeeeeeebebebbbb:
Contact : b b b bb bb bb b bb bb b b
queryA 122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
:* ***** *** * ******* ********** ******* * * ** ***** ***** *** ** * *****************:
4u1l_D_1 102:CDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTAAQISQRKLEAARVAEQLRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEAT: 201
SecStr :EEE TT EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHH B B EEEEE SSS EE:
ExpBur :bebbeebeeeebbbeebbeeeebbbbeeebeebeeeeebbeebbeebeeeeebeebeebbeeebbeebeebbebbeeebeebeebeeebeeeeeeeeebb:
Contact : b b b b b b b bb b b b
queryA 222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
:****************** *** ************** ***** ********************** * **** *:
4u1l_D_1 202:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWTAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP: 277
SecStr :EEEEEEEEBSS EEEEEETTEE TTEEE EE SSS EEEEEEEE SS SEEEEEE TT SS EEE :
ExpBur :bebebeebbbbebebebbeeeeeeeeeeeeeeeeeeeeebbebbbbbebeeeebeebbbebebeebeeeeeeeeee:
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[assembly_id:2]
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