[pdbjlvh2]Protein Model on 7qpd_D_1_B

Protein Model on 7qpd_D_1_B_1 (TEMPLATE: 7qpd )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	D 1 (M)	polymer(polypeptide(L)) [274 aa]	HLA class I histocompatibility antigen, A-3 alpha chain :1A03_HUMAN
2	b		B 1 (T)	polymer(polypeptide(L)) [348 aa]	Tapasin :TPSN_HUMAN	101T 105Y 136Q 141G 142K 143D 146T(A) 148N 149E 152R 153S 155T 156A 157V(A) 159T(M) 162Q 163I 166Q(R) 169N(E) 246T 247Q 249T 250E 251L 253E 265W (identity: 80.8 %/79.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7qpd_D_1 identity=79.6%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** ************** ************* **** ** ***** **** **** ***      *  ** * *************** * * *:
7qpd_D_1       1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 100
SecStr          :  EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEESSSSS S  B SHHHHS  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT  TTS  EEEEEEE:    
ExpBur          :eebbbebebbbebeeeeeeeebbbbbebbeeebbebbeeeeeebbeeebebbeeeeeebbeebbeebeeeeeebeeebeebbeeeeeeeeeebebebbbb:    
Contact         :                                                                               b   b                

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  * ******** * *******  ********** * ****   *   * ***  ****  ******  *** *****    ***** ***********:
7qpd_D_1     101:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 200
SecStr          :EEE TTSSEEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHHTTHHHHHHHHHTHHHHHHHHHHHHTTTTSS  B    EEEEE  SSSEEE:    
ExpBur          :bbbbeeeeeeebbbebbbeeeebbbbeeebeebeeebebbeebbeebeeeebbeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeebbb:    
Contact         :              b    bbb  b bb  bb bbb b  bb  b  b                                                    

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRW: 295
                :****************** ***  ******************************************* * ****:
7qpd_D_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW: 274
SecStr          :EEEEEEEEBSS EEEEEEETTEE TTT EEEEEEE SSS EEEEEEEEEETT TTSEEEEEEETTSSS B    :    
ExpBur          :bebebebbbeeebebebbbeeeeeeeebeeeeeeeeeeebbebbbbbebeeeeeebbbbebebeebeeeeebee:    
Contact         :                        bb bbb b           b

Protein Model on 7qpd_D_1_B_1 (TEMPLATE: 7qpd )

Input Residue Numbers for Focused Sites