[pdbjlvh2]Protein Model on 4zfz_A_1_KA

Protein Model on 4zfz_A_1_KA_1 (TEMPLATE: 4zfz )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [277 aa]	Major histocompatibility complex class I
2	b		KA 1 (C)	non-polymer(MYR)	MYRISTIC ACID	28Y 45S(V) 84E(Q) 87S(R) 91T(A) 95F 135E(Y) 177Q(W) 180Y (identity: 33.3 %/78.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4zfz_A_1 identity=78.3%

queryA        21:AGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH: 120
                :*****  ** * ************ ************* ***** * ********** ***   **   * ** *** *  **************** * :
4zfz_A_1       1:AGSHSMRYFSTTVSRPGRGEPRFIVVGYVDDTQFVRFDSDAASPKMEPRAPWMEQEGPEYWEEQTRRVKDAAQTFRVSLGNLRGYYNQSEAGSHTLQTMS: 100
SecStr          :   EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETTSSS   EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEE:    
ExpBur          :eeebebbbebebebbeeeeebebebebebbeeebbebebeeeeeebeeebebbeebeeebbeebbeebeeebeebbebbeebeeeeeeeeeeebebebbb:    
Contact         :       b                b                                      b  b   b   b                         

queryA       121:GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEA: 220
                :** ****** **** * **** **  ********** * ***    *   *  **  *****  * * *  *** *****   *********** *****:
4zfz_A_1     101:GCDLGPDGRLLRGYYQQAYDGRDYIALNEDLRSWTAADEAAQNTQRKWEAAGVAEQWRAYLEGECLESLRRYLENGKETLQRAEPPKTHVTHHPVSDHEA: 200
SecStr          :EEEE TTSSEEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEESSSSEE:    
ExpBur          :bbbbbeeeebeebbbebbbeeeebbbbeeebeebeeeeebbeebbeebeeeebbeeebeebeeebbebbeebbeebeeebeeeeebeeebbeeeeeeeeb:    
Contact         :              b                                         b  b                                        

queryA       221:TLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
                :******************* ***  *********** ******** ************************ **** *:
4zfz_A_1     201:TLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTFQKWGAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP: 277
SecStr          :EEEEEEEEEBSS  EEEEEETTEE GGG EE   EE SSS EEEEEEEEEEGGGGGGEEEEEE TTSSS EEE    :    
ExpBur          :bbbbbbebbbbbebebbbbbeeeebeeebeebeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebebee:

Protein Model on 4zfz_A_1_KA_1 (TEMPLATE: 4zfz )

Input Residue Numbers for Focused Sites