[pdbjlvh2]Protein Model on 6mtm_A_1_D

Protein Model on 6mtm_A_1_D_1 (TEMPLATE: 6mtm )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [276 aa]	HLA class I histocompatibility antigen, B-37 alpha chain :1B37_HUMAN
2	b		D 1 (D)	polymer(polypeptide(L)) [193 aa]	EM2 TCR alpha chain	79E 83R 87S(I) 172S(R) 175E 176H(Q) (identity: 50.0 %/79.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6mtm_A_1 identity=79.7%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ******************************* ******  ***** **** *******       *  *  ****  *********** * * *:
6mtm_A_1       1:GSHSMRYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRETQISKTNTQTYREDLRTLLRYYNQSEAGSHTIQRMSG: 100
SecStr          :  EEEEEEEEEEEETTTEEEEEEEEEEETTEEEEEEETTSSS   EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SSS  EEEEEEE:    
ExpBur          :eebbbbbebebebbeeeeebebebbbebbebebbebbbeeeeeebeeebebbeebeeebbeeebeebeeebeebeeebebbbeeeeeeeeeebebeebbb:    
Contact         :                                                         b   b   b                                  

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  ***** **** *********  ***** **** ******   *   *  **  ***** ******  *** *****    *****************:
6mtm_A_1     101:CDVGPDGRLLRGYNQFAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQDRAYLEGTCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSTTHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEE SSSS EE:    
ExpBur          :bebbeeeeeeebbbebbbeeeebbebeeebeebeeeeebbeebbeebeeeebbeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :                                                  b  bb                                             

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
                :****************** ***  ************** **************************** * **** *:
6mtm_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP: 276
SecStr          :EEEEEEEEBSS  EEEEESSSS  GGGEEE   EE SSS EEEEEEEEE SSTTTT EEEEE TT SS EEE    :    
ExpBur          :bebbbeebbbbebebebbeeeeeeeeebeeeeeeeeeeebbebbbbbebeeeeeeebebebebebbeeeeebeeee:

Protein Model on 6mtm_A_1_D_1 (TEMPLATE: 6mtm )

Input Residue Numbers for Focused Sites