[pdbjlvh2]Protein Model on 5wmq_A_1_C

Protein Model on 5wmq_A_1_C_1 (TEMPLATE: 5wmq )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [276 aa]	HLA class I histocompatibility antigen, B-8 alpha chain :1B08_HUMAN
2	b		C 1 (C)	polymer(polypeptide(L)) [9 aa]	ELR peptide from IAV	28Y 30H(D) 45S 57F 80Y 83R 84E(N) 87S(I) 88A(F) 91T(N) 94I(T) 95F(D) 97V(E) 98N(S) 101T(N) 102L 105Y 120H(Y) 135E(N) 137F(Y) 144Y 164S(T) 167K 168S(W) 171A 173E(V) 176H(Q) 177Q(D) 180Y 184T 188W 192Y (identity: 43.8 %/78.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5wmq_A_1 identity=78.6%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** *  ************************* ******* ***** **** ***** *       *  *  ** **************** * *:
5wmq_A_1       1:GSHSMRYFDTAMSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRMEPRAPWIEQEGPEYWDRNTQIFKTNTQTDRESLRNLRGYYNQSEAGSHTLQSMYG: 100
SecStr          :  EEEEEEEEEE  STT   EEEEEEEETTEEEEEEETT SSGGGS B HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebebbbebebeeeeeeeeeebbbbbebbebebbebbeeeeeeeebeebebbeebeeebbeebbeebeeebeebeeebeebeeeeeeeeeeebebebebb:    
Contact         :      b b              b           b                      b  bb  bb  b  bb bb  bb  b              b 

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  ***** ***  * *******  ********** ******   *   *  **  ***** ******  *** ** **    *****************:
5wmq_A_1     101:CDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARVAEQDRAYLEGTCVEWLRRYLENGKDTLERADPPKTHVTHHPISDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSSSEEESSTTHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHS  B  EEEEEEEE SSSEEE:    
ExpBur          :bebbeebeeeebbbeebbeeeebbbbeeebeebeeeeebbeebbeebeeeebbeeebeebebebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :             b b      b                   b  bb  b b  bb  b   b   b   b                             

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
                :****************** ***  ************** **************************** * **** *:
5wmq_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP: 276
SecStr          :EEEEEEEEBSS  EEEEEETTEE GGG EE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE    :    
ExpBur          :bbbebeebbbbebebebbeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebeeee:

Protein Model on 5wmq_A_1_C_1 (TEMPLATE: 5wmq )

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