[pdbjlvh2]Protein Model on 4zfz_A_1_C

Protein Model on 4zfz_A_1_C_1 (TEMPLATE: 4zfz )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [277 aa]	Major histocompatibility complex class I
2	b		C 1 (C)	polymer(polypeptide(L)) [5 aa]	5-mer lipopeptide from Protein Nef :NEF_SIVS4	90D 94I(T) 97V 98N(S) 101T(N) 102L 105Y 137F(Q) 164S(T) 167K 168S(W) 173E(V) (identity: 41.7 %/78.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4zfz_A_1 identity=78.3%

queryA        21:AGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH: 120
                :*****  ** * ************ ************* ***** * ********** ***   **   * ** *** *  **************** * :
4zfz_A_1       1:AGSHSMRYFSTTVSRPGRGEPRFIVVGYVDDTQFVRFDSDAASPKMEPRAPWMEQEGPEYWEEQTRRVKDAAQTFRVSLGNLRGYYNQSEAGSHTLQTMS: 100
SecStr          :   EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETTSSS   EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEE:    
ExpBur          :eeebebbbebebebbeeeeebebebebebbeeebbebebeeeeeebeeebebbeebeeebbeebbeebeeebeebbebbeebeeeeeeeeeeebebebbb:    
Contact         :                                                                     b   b  bb  bb  b               

queryA       121:GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEA: 220
                :** ****** **** * **** **  ********** * ***    *   *  **  *****  * * *  *** *****   *********** *****:
4zfz_A_1     101:GCDLGPDGRLLRGYYQQAYDGRDYIALNEDLRSWTAADEAAQNTQRKWEAAGVAEQWRAYLEGECLESLRRYLENGKETLQRAEPPKTHVTHHPVSDHEA: 200
SecStr          :EEEE TTSSEEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEESSSSEE:    
ExpBur          :bbbbbeeeebeebbbebbbeeeebbbbeeebeebeeeeebbeebbeebeeeebbeeebeebeeebbebbeebbeebeeebeeeeebeeebbeeeeeeeeb:    
Contact         :                b                          b  bb    b                                               

queryA       221:TLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
                :******************* ***  *********** ******** ************************ **** *:
4zfz_A_1     201:TLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTFQKWGAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP: 277
SecStr          :EEEEEEEEEBSS  EEEEEETTEE GGG EE   EE SSS EEEEEEEEEEGGGGGGEEEEEE TTSSS EEE    :    
ExpBur          :bbbbbbebbbbbebebbbbbeeeebeeebeebeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebebee:

Protein Model on 4zfz_A_1_C_1 (TEMPLATE: 4zfz )

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