Protein Model on 4u1m_A_1_C_1
(TEMPLATE: 
4u1m
)Protein Model on 4u1m_A_1_C_1
(TEMPLATE: 4u1m
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HLAE_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [277 aa] | HLA class I histocompatibility antigen, B-42 alpha chain :1B42_HUMAN | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [9 aa] | Protein Nef :Q90VG9_9HIV1 | 26L(M) 28Y 30H(Y) 80Y 83R 84E(N) 87S(I) 88A(Y) 90D(A) 91T(Q) 94I(T) 97V(E) 98N(S) 101T(N) 105Y 116L 120H(Y) 137F(Y) 144Y 164S(T) 167K 168S(W) 171A 173E(V) 176H(Q) 177Q(D) 180Y 184T 188W 192Y (identity: 40.0 %/79.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4u1m_A_1 identity=79.1% |
queryA 22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
:**** ** **************************** ****** ***** **** ***** * ** * ** **************** * *:
4u1m_A_1 1:GSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYG: 100
SecStr : EEEEEEEEEE TTSSS EEEEEEEETTEEEEEEETTSSS EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT TTS EEEEEEE:
ExpBur :eebebbbebebebbeeeeebebebebebeebebbebeeeeeeeebeeebebbeebeeebbeebbeebeeebeebbeebeebeeeeeeeeeeebebebbbb:
Contact : b b b b bb bb bb b bb b b b b
queryA 122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
:* ***** *** * ******* ********** ****** * * ** ***** ****** *** ** ** *****************:
4u1m_A_1 101:CDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARVAEQDRAYLEGTCVEWLRRYLENGKDTLERADPPKTHVTHHPISDHEAT: 200
SecStr :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT B EEEEEEEE SSSEEE:
ExpBur :bbbbeebeeeebbbebbbeeeebbebeeebeebeeeeebbeebbeeeeeeeebeeeeeebebebbeebeebbeebeeebeeebebeeebeeeeeeeeebb:
Contact : b b b bb b b bb b b b b
queryA 222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPA: 298
:****************** *** ************** **************************** * **** * :
4u1m_A_1 201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPS: 277
SecStr :EEEEEEEEBSS EEEEEETTEE GGGEEE EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE :
ExpBur :bebbbebbbbbebebbbbeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeebebeeeee:
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[assembly_id:1]
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