Protein Model on 4u1k_A_1_C_1
(TEMPLATE: 
4u1k
)Protein Model on 4u1k_A_1_C_1
(TEMPLATE: 4u1k
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HLAE_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [277 aa] | HLA class I histocompatibility antigen, B-7 alpha chain :1B07_HUMAN | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [9 aa] | Protein Nef :Q90VG9_9HIV1 | 28Y 30H(Y) 80Y 83R 84E(N) 87S(I) 88A(Y) 90D(A) 91T(Q) 94I(T) 97V(E) 98N(S) 101T(N) 102L 105Y 116L 120H(Y) 135E(D) 137F(Y) 144Y 164S(T) 167K 168S(W) 171A 173E 176H(Q) 177Q(R) 180Y 188W 192Y (identity: 43.3 %/79.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4u1k_A_1 identity=79.0% |
queryA 22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
:**** ** **************************** ****** ***** **** ***** * ** * ** **************** * *:
4u1k_A_1 2:GSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYG: 101
SecStr : EEEEEEEEEE TTSSS EEEEEEEETTEEEEEEETTSSS EESSTTTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT SSS EEEEEEE:
ExpBur :eebebbbebebebeeeeeebebebebebeebebbebebeeeeeebeeebebbeebeeebbeebbeebeeebeebeeebeebeeeeeeeeeeebebebebb:
Contact : b b b bb bb bb b bb bb b b b
queryA 122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
:* ***** *** * ******* ********** ****** * * *** ***** ***** *** ** * *****************:
4u1k_A_1 102:CDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEAT: 201
SecStr :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHS B EEEEEEEE SSSEEE:
ExpBur :bebbeeeeeeebbbebbbeeeebbbbeeebeebeeeeebbeebbeebeeeeebeebeebbeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:
Contact : b b b b bb b b bb b b b
queryA 222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
:****************** *** ************** **************************** * **** *:
4u1k_A_1 202:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP: 277
SecStr :EEEEEEEEBSS EEEEEETTEE STT EE EE SSS EEEEEE EEETT GGGEEEEEE TT SS EEE :
ExpBur :bbbebebbbbbebebebeeeeeebeeeeeeeeeeeeeeebbebbbbbebeeeebeebbbbbebebbeeeeeeeeee:
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[assembly_id:1]
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