Protein Model on 3lks_A_1_C_1
(TEMPLATE: 
3lks
)Protein Model on 3lks_A_1_C_1
(TEMPLATE: 3lks
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HLAE_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [276 aa] | HLA class I histocompatibility antigen, B-35 alpha chain :1B35_HUMAN | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [9 aa] | NP418 epitope from 1980 influenza strain | 26L(M) 28Y 30H(Y) 83R 84E(N) 87S(I) 88A(F) 91T(N) 94I(T) 97V(E) 98N(S) 101T(N) 102L 105Y 116L(I) 118W(R) 120H(Y) 144Y 164S(T) 167K 168S(W) 173E(V) 176H(Q) 177Q(L) 180Y 184T(L) 188W 192Y (identity: 32.1 %/76.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3lks_A_1 identity=76.8% |
queryA 22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
:**** ** * *********** ************* ****** ***** **** ***** * * * ** ************* * * *:
3lks_A_1 1:GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRESLRNLRGYYNQSEAGSHIIQRMYG: 100
SecStr : EEEEEEEEE TTSSS EEEEEEEETTEEEEEEETTSSS EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT SSS EEEEEEE:
ExpBur :eebebbbebebebbeeeeebebebbbebeebebbebbbeeeeeebbeebebbeebeeebbeebbeebeebbeebbeebeebeeeeeeeeeeebebebebb:
Contact : b b b bb bb b b bb bb b b b b
queryA 122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
:* ****** *** * ******* ***** **** ****** * * ** ***** ***** *** ***** ********** ******:
3lks_A_1 101:CDLGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPVSDHEAT: 200
SecStr :EEE SS SEEEEEEEEEETTEEEEEE TTSS EEE SHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT B EEEEEEEE SSSEEE:
ExpBur :bbbbeebeeeebbbebbbeeeebbebeeebeebeeeeebbeebeeeeeeeebbeebeeebebebbeebeebbeebeeebeeebebeeebeeeeeeeeebb:
Contact : b b bb b bb b b b b
queryA 222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
:****************** *** ************** **************************** * **** *:
3lks_A_1 201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP: 276
SecStr :EEEEEEEEBSS EEEEEETTEE TTT EE EE SSS EEEEEEEEEETT GGGEEEEEE TTSSS EEE :
ExpBur :bbbbbeebbbbebebebbeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbebebeebeeeeebeeee:
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[assembly_id:1]
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