[pdbjlvh2]Protein Model on 2rfx_A_1_C

Protein Model on 2rfx_A_1_C_1 (TEMPLATE: 2rfx )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [275 aa]	HLA class I histocompatibility antigen, B-57 alpha chain :1B57_HUMAN
2	b		C 1 (C)	polymer(polypeptide(L)) [9 aa]	LSSPVTKSF	26L(M) 28Y 30H(Y) 84E 87S(N) 88A(M) 94I(T) 95F(Y) 98N 101T(I) 105Y 116L(I) 120H(Y) 135E(D) 144Y 164S(T) 167K 168S(W) 173E(V) 176H(Q) 177Q(L) 180Y 184T(L) 188W 192Y (identity: 36.0 %/77.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:2rfx_A_1 identity=77.1%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** *  *********** ************* ******* ***** **** **** ***     **  * ***    **********  * * *:
2rfx_A_1       1:GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRMAPRAPWIEQEGPEYWDGETRNMKASAQTYRENLRIALRYYNQSEAGSHIIQVMYG: 100
SecStr          :   EEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETTSSS   EE STTTTT  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebebbbebebbbbeeeeebebebebebbebebbebebeeeeeebbbebebbeebeeebbeeebeebeebbeebbeebebbbebeeeeeeeebebebebb:    
Contact         :    b b b                                                     b  bb     bb  b  b   b          b   b 

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  ***** ***  * *******  ***** **** ******   *   *  **  *****  *****  *** *****    *****************:
2rfx_A_1     101:CDVGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHHHHHHTHHHHSS B  EEEEEEEESSSSEEE:    
ExpBur          :bbbbeebebeebbbebbbeeeebbebeeebeebeeeeebbeebeeeeeeeeebeeeeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :             b        b                   b  bb    b  bb  b   b   b   b                             

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWK: 296
                :****************** ***  ************** **************************** * **** :
2rfx_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 275
SecStr          :EEEEEEEEBSS  EEEEEESSSB TTT EE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE   :    
ExpBur          :bbbebeebbebebebebeeeeeeeeeebeeeeeeeeeeebbebbbbbebeeebbeebbbebebeebeeeeeeeee:

Protein Model on 2rfx_A_1_C_1 (TEMPLATE: 2rfx )

Input Residue Numbers for Focused Sites