Protein Model on 1im9_A_1_B_1 (TEMPLATE: 1im9 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(HLAE_HUMAN) A 1 (A) polymer(polypeptide(L)) [275 aa] HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-4 CW*0401 ALPHA CHAIN :1C04_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [100 aa] Beta-2 microglobulin :B2MG_HUMAN 29F 30H(S) 31T 33V 35R(W) 44I 46V 48Y 53Q 56R 69R 117Q 118W(R) 136Q 137F 138A 140D 141G 143D 211T 213H 223R 225W 252V 253E 255R 256P 257A 258G 259D 263Q 265W (identity: 90.6 %/81.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1im9_A_1 identity=81.5%
queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** **** ********* ************* ******  ** ** **** *******      **  ***** ********* ****** * *:
1im9_A_1       2:GSHSMRYFSTSVSWPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGEPREPWVEQEGPEYWDRETQKYKRQAQADRVNLRKLRGYYNQSEDGSHTLQRMFG: 101
SecStr          :  EEEEEEEEEE  TT SS EEEEEEEETTEEEEEEETTSSS   EESSGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebbbbbebebbeeeeeeebebebbbebbebebbebebeeeebebeeeeebbeebeeebbeebbeebeeebeebeeebeebbeeeeeeeeeebebebbbb:    
Contact         :       bbb b b        b b b    b  b            b                                               bb   

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :* ****** **** *********  ********** ******   *   * ***  ***** ******  *** *****   * ********* ******:
1im9_A_1     102:CDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHEAT: 201
SecStr          :EEE TTSSEEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEE SSSEEE:    
ExpBur          :bbbbeebeeeebbbebbbeeeebbbbeeebeebeeeeebbeebeeebeeeebbeeebeebeeebbeebeebbeebeeebeeeeebeeebbeeeeeeeebb:    
Contact         :              bbb bb b                                                                   b b        

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWK: 296
                :****************** ***  ********************************************* *****:
1im9_A_1     202:LRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWK: 276
SecStr          :EEEEEEEEBSS  EEEEEETTEE GGGEEE   EE SSS EEEEEEEEEETT GGGEEEEEE TTSSS EEE   :    
ExpBur          :bbbbbebbbbbebebbbeeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebeee:    
Contact         : b b                          bb bbbbb   b b                                                        


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