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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(PALS1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [341 aa] | Tight junction protein ZO-1 :ZO1_HUMAN | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [10 aa] | Junctional adhesion molecule A :JAM1_HUMAN | 264D(S) 265I(V) 266P(G) 267L 268G(R) 269A(L) 270T(A) 271V(G) 281S(A) 284V(L) 314V(R) 318F(V) 321L 322S(L) 383S(D) 384Q(N) 385E(G) 387P(L) 391Q(L) 404A(R) (identity: 10.0 %/22.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3tsz_A_1 identity=22.8% |
queryA 253:TVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM-HGTLTFVLIPSQQIKPPPAKETV----: 347 : * * * * * * * ** *** * * * * * * * * * * : 3tsz_A_1 9:SMKLVKFRKGDSVGLRLAGGNDV-GIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL---AQKKKDVYRRIVESDV: 103 SecStr : EEEEEEE SS EEEEEETTT-EEEEEEE TT HHHHTT - TTEEEEEETTEE TT HHHHHHHHHHS TTSEEEEE---EEE HHHHGGGTSS : ExpBur :eeeebebebeeebbbebbbbbee-bbbbebeeeebebeeeeb-eebbbbbebeeeebeebbbbebeeebeebeeeeebebe---bbeeeeebeebeeeee: Contact : bbbbbbbb b b b b bb bb queryA 348:---IHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVIS---QEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKN: 441 : ** * ** **** ** * * * * * * * * * : 3tsz_A_1 104:GDSFYIRTHFEYE-KESPY------GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYXXXXXXXXXXXXXXXXXXXX: 196 SecStr :S EEEEE S B - SSTT------B B TT EEEEEESSGGGSSSEEEEEEE GGG EEEEEEEE HHHHHHHHSS --------------------: ExpBur :bbbbebbbbbebe-eeeee------bbebeeeebbebbbbbeeeeeeebbbbbbeeeeeeeeebbbbbeeebeeeeeeee--------------------: Contact :b b bbbb b b b queryA 442:KKKRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRSRRDQEVAGRDYHFVSRQAFEADIA: 541 : ** * * ** ** * * * * * ** * : 3tsz_A_1 197:XXXXXXXXXXXXXXXXXXXTKFPAYERVVL--REAGFLRPVTIFGPI---ADVAREKLAREEPDIYQIAKSEPRDAGTDQRXXGI---------------: 276 SecStr :------------------- SEEEEEE--EE SS EEEESTT---HHHHHHHHHHH TTTEEE SSS -- ---------------: ExpBur :-------------------eebebbbebee--eeeeeebbbbbbebb---bebbbebbbeeeeeebeebeeeeeeeeeeee--ee---------------: queryA 542:AGKFIEHGEFEKNLYGTSIDSVRQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREIIEKTREMEQNNGHYFDT: 641 : * * * ** * * * * * * * ** * * *: 3tsz_A_1 277:----------------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESR-KSARKLYERSHKLRKNNHHLFTT: 359 SecStr :---------------- HHHHHHHHTTT EEEE HHHHHHHHHTT EEEEEE HHHHHHHHHHH SS - HHHHHHHHHHHHHHHGGG SE: ExpBur :----------------beeebbeebbeeeebbbbebebebbbebbeeeebbbbbbbbbeeeebbeebbeeebeeee-eebeebbeebeebeeebeebbeb: queryA 642:AI-VNSDLDKAYQELLRLINKLDTEPQWV: 669 : * ** * * * * **: 3tsz_A_1 360:TINLNSMNDGWYGALKEAIQQQQNQLVWV: 388 SecStr :EEE TT HHHHHHHHHHHHHHHSEEEE: ExpBur :ebebebeeeebbeebeebbeebbeeebbe: |