Protein Model on 8zjf_B_1_A_1
(TEMPLATE: 
8zjf
)Protein Model on 8zjf_B_1_A_1
(TEMPLATE: 8zjf
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | B 1 (A) | polymer(polypeptide(L)) [909 aa] | Integrin alpha-E :ITAE_HUMAN | |
| 2 | b | A 1 (B) | polymer(polypeptide(L)) [510 aa] | Integrin beta-7 :ITB7_HUMAN | 152K(E) 184K(R) 187S(Y) 188N(E) 191Y(F) 211Y(S) 212V(Q) 214R(V) 215K(M) 252R 349L 351S(Q) 354I(F) 373W 401A(Y) 403Y 406Y 426R 429H 430M(H) 455Q 456I(M) 457G 459Y 484L(F) 486Y(H) 488E(H) 489Q(G) 490R(E) 517P(T) 518L(N) 520R 548Q(F) 580W(Y) 604E(L) 828S(Q) 830R(K) (identity: 29.7 %/34.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8zjf_B_1 identity=34.0% |
queryA 152:KGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQ--FAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREEL: 249
: *** * * ** ** * ** ** **** * * * * * * * :
8zjf_B_1 197:EAGTEIAIILDGSGSIDPPDFQRAKDFISNMMRNFYEKCFECNFALVQYGGVIQTEFDLRDSQDVMASLARVQNITQVGSVTKTASAMQHVLDSIFTSSH: 296
SecStr : EEEEEEEE TTS HHHHHHHHHHHHHHHHHHHHH SSEEEEEEEESSS EE TTGGGSHHHHHHHHHT HHHHHHHHHHHTSSGGG:
ExpBur :eeebbbbbbbbbbeebeeebbeebbebbbebbeebbeebeebbbbbbbbbbeeeebbebeebeeeeebbeebeebeeeeebbebbbbbeebbeebbeeeb:
Contact :b b bb b bb bb bb
queryA 250:GARPDATKVLIIITDG-------EATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFTELQKKIYVIEGTSKQDL: 342
:* * * ** *** * * * ** * * * ** * * * * * *** *:
8zjf_B_1 297:GSRRKASKVMVVLTDGGIFEDPLNLTTVINSPKMQGVERFAIGVGEEFKSARTARELNLIASDPDETHAFKVTNYMALDGLLSKLRYNIISMEGTVGDAL: 396
SecStr :T TTSEEEEEEE SS S SS HHHHHS GGGSS EEEEE SHHHHHSTHHHHHHHHS SSSSSEE S GGGHHHHHHHHHHTT SS :
ExpBur :ebbeebebbbbbbbbeeeeebeeebeebeeeeebeeeebbbbbbbeebeeeebeebbeebbeeeeeebbbebeebeebeebbeebeeebbeeeeeeeeee:
Contact : b
queryA 343:TSFNMELSSSGISAD-LSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEV----RAGYLGYTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQ: 437
: * * ** * ***** ** ** * * **** * * * * ***** * * * *:
8zjf_B_1 397:---HYQLAQIGFSAQILDERQVLLGAVGAFDWSGGALLYDTRSRRGRFLNQTAAAAADAEAAQYSYLGYAVAVLHKTCSLSYIA-GAPRYKHHGAVFELQ: 492
SecStr :---SSTT EEEEEEE SSSEEEEEETTHHHHTB EEEEETTTTEEEEE SSSHHHHHTTT BTSEEEEEE SS EEEEE-EETTGGGTBEEEEEE:
ExpBur :---ebeebbbbebbebbeeeebbbbbbbbeeebbbbbbbbbeeeebbbbeeeeeeeeeeeebeebebbebbbbbeeeeeebbbb-bbbebeeebbbbbbe:
Contact : b b b b b b b b bb
queryA 438:EPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFIYQ--RRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDG: 535
: * * * * ***** *** ** * ** * ** ** *** * * * * ** *** * * * * :
8zjf_B_1 493:KE--GREASFLPVLEGEQMGSYFGSELCPVDIDMDGSTDFLLVAAPFYHVHGEEGRVYVYRLSEQDGSFSLARILSGHPGFTNARFGFAMAAMGDLSQDK: 590
SecStr :EE--TTEEEEEEEEE STTS BTSEEEEE TT SSS EEEEEETT SSSEEEEEEEEEE TTT EEEEEEE TT SEEEETSEEEE SSSSS:
ExpBur :ee--eeebbbeeebebeeeebbbbbebbebbbeeeebbebbbbbbbebeeeeebbebbbbebbeeebebeeeeebeeeeeeeebebbebbbebeebbeee:
Contact : bbb b b b bbb bb b
queryA 536:LVDVAVGAPLEEQGA--------VYIFNGRHGGLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVAVGAESQMIVLSSRPVVDMVTLMSFSPA: 627
:* *** ***** ** *** ** *** ***** * * * ** * * * ****** ** * * ***** * * * :
8zjf_B_1 591:LTDVAIGAPLEGFGADDGASFGSVYIYNGHWDGLSASPSQRIRASTVAPGLQYFGMSMAGGFDISGDGLADITVGTLGQAVVFRSRPVVRLKVSMAFTPS: 690
SecStr :S EEEEETTTTTT GGG EEEEE BTTBS SS SEEEEGGGT SS STTSEEEEEE SSSSS EEEEE SB EEEEEE EE EE SSS:
ExpBur :bbbbbbbbbbbeeeeeeeebbbbbbbbbbeeebbbeeebbebebeebbebbeebbbbbbbebebeeeebbbbbbbbebbbbbbbbbbbbebebebebeee:
Contact : b b b
queryA 628:EIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQ-GRLVANLTYTLQLDGHRTRRRGLFPGGRHEL--RRNIAVTTSMSCTDFSF---HFPVCVQDL: 721
: * ** ** * * * * * ** * *** * * * * * * * * :
8zjf_B_1 691:ALPI-----------GFNGVVNVRLCFEISSVTTASESGLREALLNFTLDVDVGKQRRRLQCSDVRSCLGCLREWS-SGSQLCEDLLLMPTEGELCEEDC: 778
SecStr :SB T-----------T S EEE EEEE SSS TTSTTT EEEE EEES S SS S EESSGGGTT EEEE -SSSEEE EEEE STT TTS :
ExpBur :ebee-----------ebeeebebebbbeeebebeeeebbbeebebbbebebbeeeeeebbebeeeeebeebeeebe-eeeebeeebebbebeebeeeeeb:
queryA 722:ISPINVSLNFSLWEEEGTPRDQRAQGKDIPPIL-RPSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLD: 820
: * * * ** * *** * * ** * * * * * * * * ** * :
8zjf_B_1 779:FSNASVKVSYQLQTPEG-------QTDHPQPILDRYTEPFAIFQLPYEKACKNKLFCVAELQLATTVSQ-QELVVGLTKELTLNINLTNSGEDSYMTSMA: 870
SecStr :SS EEEEE EE SS------- SS EE TTS S EEE B SSSSTT EEE EES - TTTTSSEEEEE EEE SS SEE :
ExpBur :ebebebebebebeeeee-------ebeebbbbbbeeeeeebeeebebebeeeeeeebbbebebebeeee-ebeeeeeeeeeebebebebebeebbbbbbb:
queryA 821:LHFPPGLSFRKVEMLKPHSQIPVSCEE-LPEESRLLSRALSCNVSSPIFK---AGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDSDLLEDN: 911
:* * * * ** * * * * * * * * * ** * * * ** ** * :
8zjf_B_1 871:LNYPRNLQLKR--MQKPPSP-NIQCDDPQPVASVLI---MNCRIGHPVLKRSSAHVSVVWQLEENAFPNR----TADITVTVTNSNERRSLANET: 955
SecStr :EE TTEEEEE--EE SS- SSS --- TT S B EEEEEEESS ----SS EEEEEE SSS EEE :
ExpBur :bebeeebeeee--eeebeee-ebebeeeeeeeeebe---bebebbebebeeeebeeebbbeeeeeebeee----eebbebebebebeeeeebeee:
Contact : b b
|
[assembly_id:1]
[help]