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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(AMPN_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [853 aa] | Leucyl-cystinyl aminopeptidase :LCAP_HUMAN | |
2 | b | I 1 (I) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 596Q(N) 598Q(S) 614T (identity: 33.3 %/36.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6ydx_B_1 identity=36.3% |
queryA 71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSL: 170 :* *** * * * * ** * ** * * ** ** * ** ** * * *: 6ydx_B_1 40:WAQIRLPTAVVPLRYELSLHPNLTS-----MTFRGSVTISVQALQVTWNIILHSTGHNIS-----RVTFMSAVSSQEKQAEILEYAYHGQIAIVAPE-AL: 128 SecStr : SS SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS EEEEEEE SEEEE-----EEEEE STTT EE EEE SSSEEEEEEEE-EE: ExpBur :eeeeebbebbebeebbbebebebee-----eebebebebbbebeeebeebbbbbeebebe-----ebbbbeeeeeeeeebebeeeeeebbbbbebee-eb: queryA 171:VKDSQYEMDSEFEGELADDLAGFYRSEYM-EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEF: 269 : * * *** * * * * * ** ** ******** ** * * * ****** ** * * * **: 6ydx_B_1 129:LAGHNYTLKIEYSANISSSYYGFYGFSYTDESNEKKYFAATQFEPLAARSAFPCFDEPAFKATFIIKIIRDEQYTALSNM-PKKSSVVL--DDGLVQDEF: 225 SecStr : TT EEEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTHHHHS B TT BEEEEEEEEESS EEE SS- EEEEE T--TSSEEEEEE: ExpBur :eeeeebebbbebebebeebbbbbbbbebebeeeeebebbbbbbbbbbbbebbbbbbbbebbbbbebebbbeeebebbbbb-eeeeeeee--eeebbbbeb: queryA 270:HTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLF: 369 : ****** **** * * ** * * * * * * *** * * ** *** * * *** ********* * ** ** : 6ydx_B_1 226:SESVKMSTYLVAFIVGEMKNLS-QDVNGTLVSIYAVPEKIGQVH--YALETTVKLLEFFQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREETLLY: 322 SecStr :EE SB GGG EEE EEEE-EEETTEEEEEEE GGGGGGGH--HHHHHHHHHHHHHHHHHS SSEEEEEEESS SSSEE TTEEEEEHHHH : ExpBur :eebeebbbbbbbbbbbebeeee-eeeeebebbbbbbeebbebbe--bbbebbeebbebbbebbeeebebebbbbbbbbbbbeebbbbbbbbbbbbbbbbb: queryA 370:DPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDV----YRVMAVDALASSHPLSTPASEINTP: 465 :* ** * *************** ************ ** * * * * * * **** * * : 6ydx_B_1 323:DSNTSSMADRKLVTKIIAHELAHQWFGNLVTMKWWNDLWLNEGFATFMEYFSLEKI-----FKELSSYEDFLDARFKTMKKDSLNSSHPIS---SSVQSS: 414 SecStr : TTT HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGGGTHHHHHHHHHHHHHHH----- GGG THHHHHHHHHHHHHHHHSTT SS--- SH: ExpBur :eeeebbbeebbebbebbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeee-----beebebebebbebbbebbebbbbebbbebb---eebeee: queryA 466:AQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTL--SQ: 563 : ** * ** ** ** * * ** ****** *** * *** * * * * **** *** ** * *: 6ydx_B_1 415:EQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYLHNHSYASIQSDDLWDSFNEVTNQX-----XDVKRMMKTWTLQKGFPLVTVQKKGKELFIQQ: 509 SecStr :HHHHTTSSHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTTEEE HHHHHHHHHHHH ------- TTTTHHHHHSSS EEEEEEEETTEEEEEE: ExpBur :bebbbbbbebbebbbbbbbbbbeeebeeeebeebbbebbeebeeebbebeebbebbeeeeee-------eebebbebbbeebbbbbbbbeeeebebebeb: queryA 564:EHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDV--RAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQI: 661 :* * * * * * ** * * ** * * *** * * * ** ** : 6ydx_B_1 510:ERFFLXXXXXXXXXXX-XYLWHIPLSYVTEGRNYSKYQSVSLLDKKSGVINLTEEVLWVKVNINMNGYYIVHYADDDWEALIHQLKINPYVLSDKDRANL: 608 SecStr :EE ------------- EEEEEEEEETTTEEEEEEEEE SSEEEEE SS EEEEEESGGG SSSEEEE HHHHHHHHHHHHH GGGS HHHHHHH: ExpBur :ebbee-------------eebebbbbbbbbbeeeeeeeeeeebeeeeeebebeeebebbbbbbebebbbbbbbeeebbeebbebbeeebebbbbebbbbb: Contact : b b b queryA 662:INDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNN----------TNNWREIPENLMDQY: 751 :** * ** *** * * * * ** * * * * ** * * * ** * : 6ydx_B_1 609:INNIFELAGLGKVPLKRAFDLINYLGNENHTAPITEALFQTD---LIYNLLEKLGYM-DLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRSALLE--: 702 SecStr :HHHHHHHHHHTSS HHHHHHHGGGGGG HHHHHHHHHHHH---HHHHHHHHHT H-HHHHHHHHHHHHHTHHHHHT SSS S HHHHHHHHHHHH--: ExpBur :bbbbbbbbeeeebebbbbbebbebbeebeebbbbebbbebbe---bbbbbbbbeeee-ebbeebbeebbebbeebbeebeeeeeeebbebebbeebbe--: queryA 752:SEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNP: 851 : ** * ** ** ** * * * * *** * * ** : 6ydx_B_1 703:-------FACTHNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVF--KVGAKTDKGWSFLLGKYISIGSEAEKNKILEALASSEDVRKLYWLMKSSLNG: 793 SecStr :-------HHHHTT TTHHHHHHHHHHHHHTTTT S STTHHHHH--HHHTTSHHHHHHHHHHHHH S HHHHHHHHHHHHT S HHHHHHHHHHHHHT: ExpBur :-------bbbebebeebeeebeeebeebbeeeeeeebebbbbbbbb--bbbbeeeebbebbbebbeeeebbbbbbbbbebbbebeeeebbeebbebbbee: queryA 852:DLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWV: 951 :* * * * * * **** ** ** ** * * *** * * * * * *** ** * : 6ydx_B_1 794:DNFRTQKLSFIIRTVGRHFPGHLLAWDFVKENWNKLVQKFPLGSYTIQNIVAGSTYLFSTKTHLSEVQAFFENQSEATF--RLRCVQEALEVIQLNIQWM: 891 SecStr :SSS GGGHHHHHHHHHHSHHHHHHHHHHHHHTHHHHHHHS SSSHHHHHHHHHHHTT HHHHHHHHHHHHHH HHHH--T HHHHHHHHHHHHHHHHH: ExpBur :eebbbbbbbbbbebbbebeebbeebbebbeebbebbeebbebbbebbbbbbebbbebbbeeeebeebeebbeeeeeebb--ebebbebbbbebeebbebb: queryA 952:KENKEVVLQWF: 962 : * * : 6ydx_B_1 892:EKNLKSLTWWL: 902 SecStr :HHHHHHHHHH : ExpBur :eebbeebeeeb: |