#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | D 1 (A) | polymer(polypeptide(L)) [898 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | A 1 (B) | polymer(polypeptide(L)) [114 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 273Y 323P 324T 326F 328P 329L 330V 331R 332K 338V 339P 340F 341V 344T 368F 371L 372L 374Y 378P 379A 380M 381H 382A 383A 384S 386N 387L 388L 389L 390D 391K 392R 396F 398V 400A 402T 403N 405V 407F 447N 509W 514L 515Y 518S 523D 666M (identity: 100.0 %/97.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7d4f_D_1 identity=97.2% |
queryA 6:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 105 :***************** ***************************************************************************: 7d4f_D_1 7:SFLNRVCGVSAARLTPCXXXXXXXXVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 106 SecStr : HHHHHHHS S EEE -------- EEEEEEE SS EEEEEEE S EEEEEE SSS EEEEEEEEEE HHHHHHHHHHHHHHTTSTTB EEEEEE : ExpBur :eeeeebeeebebebeee--------eebbebeeeeebbbbbebeeeeeebbbbeeeeeeeeeebbbbeebeeeebeebeebbeebeebebbbebebbebe: queryA 106:IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 205 :* ************************************************************************************************: 7d4f_D_1 107:IXXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 206 SecStr : --- EEEEEEEEE SSBHHHHHHHHHS TTS HHHHHHHHHTTSS GGGGGSTTSS TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEEE : ExpBur :e---eebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbebbeebbbebbb: queryA 206:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR: 305 :****************************************************************************************************: 7d4f_D_1 207:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR: 306 SecStr : GGGBBTTS B TT EE STT EE HHHHHHHHHHHHHTTTTSGGGBGGG SSS B TT HHHHHHHHHHH TT S SSGGG SSHH: ExpBur :bbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbebebbbbbeebeebb: Contact : bb b queryA 306:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV: 405 :****************************************************************************************************: 7d4f_D_1 307:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV: 406 SecStr :HHHHHHHHHHHHTTTS GGG EEEEEEEEETTEEEEEEEEEEETTTEEEE S SEES HHHHHHHHHSHHHHHHSSEE SS SS EEEESSSS : ExpBur :bbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeebbebbbebbbbebeeeeeebebeebebebebbeeeee: Contact : bb b bbbbb bbbb b b bb b bbbbbbb bbbbbbb b b b bb b queryA 406:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP: 505 :****************************************************************************************************: 7d4f_D_1 407:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP: 506 SecStr : B EE HHHHHHHHHTT TTSS B B TTHHHHHHGGGGG HHHHHHHHHHHGGGGTT GGG S TTS TG: ExpBur :eeeebeeeeebeebeebbeeeebbeeeeebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeeeeeebbbb: Contact : b b queryA 506:FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV: 605 :****************************************************************************************************: 7d4f_D_1 507:FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV: 606 SecStr :GGGS HHHHHHHS HHHHHHHHHHTTTS EEEEEEE BSSS EEEEE HHHHHHHHHHHHHHHHHHTT SSSB TT STTTHHHHHHHHH: ExpBur :beeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeeeeeeeebebebbbbbbbbbbbbbbbbebbebbeeeeebbbbbebebeebbbeebbeeb: Contact : b bb b b queryA 606:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN: 705 :****************************************************************************************************: 7d4f_D_1 607:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN: 706 SecStr :SSS SSEEEEE TTHHHH HHHHHHHHHHHHTT TTT HHHHHHHHHHHHHHHTS EEE SSEEEE S TT TTHHHHHHHHHHHHHHHHHHH: ExpBur :beebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbeebbbebebbbbebbebbebbbbbbbbbbbbbbbbb: Contact : b queryA 706:ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL: 805 :****************************************************************************************************: 7d4f_D_1 707:ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL: 806 SecStr :HHHTS GGG HHHHHHHHHHHHHHHT S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS HHHHHHHHHHHHS TTS EEE S: ExpBur :bbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeebbbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbeeeeb: queryA 806:TKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV: 905 :****************************************************************************************** : 7d4f_D_1 807:TKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXX: 906 SecStr :SS S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEE HHHHH HHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHT ----------: ExpBur :eebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeebeeeeeebbeebbebbbebbbbeeeeeeeebebbebbbebbeebeeee----------: queryA 906:MLTNDNTSRYWEPEFYEAMYTPHT: 929 : *******************: 7d4f_D_1 907:XXXXXNTSRYWEPEFYEAMYTPHT: 930 SecStr :----- TTSHHHHHGGGSS : ExpBur :-----eeeeeeeeeebeebbeeee: |