#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (A) | polymer(polypeptide(L)) [908 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | J 1 (A) | non-polymer(POP) | PYROPHOSPHATE 2- | 551K 553R 620P 621K (identity: 100.0 %/98.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dfg_C_1 identity=98.2% |
queryA 5:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 104 :****************************************************************************************************: 7dfg_C_1 6:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 105 SecStr : HHHHHHHTTS EEEESSSTTS EEEEEEEE SS EEEEEEEE SEEEEEEE TT EEEEEEEEEE HHHHHHHHHHHHHSTT TTB EEEEEE: ExpBur :eebbeebbeeeebebeeeeeeeeeeebebbbbeeeeebbbbbebeeeebbbbbbeeeeeeeeebbbbbbbeeeebbeebeebbeebeebebbbebbbbee: queryA 105:RIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 204 :*** ***********************************************************************************************: 7dfg_C_1 106:RIDXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 205 SecStr : -- EEEEEEEEE SSBHHHHHHHHHS TTS SHHHHHHHHTTSS GGGTTSTTSS TTT TTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTEEEE: ExpBur :eee--eebbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbbebbeebbebbeebbebbebbeebbbebe: queryA 205:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 304 :****************************************************************************************************: 7dfg_C_1 206:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 305 SecStr : GGGBBSS B TT EE TT EE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B SS HHHHHHHHHHH TT S SSGGG SSH: ExpBur :bbbbbbbbebbbbebbebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbebbeebbeebbebbebebbbbbeebeeb: queryA 305:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 404 :****************************************************************************************************: 7dfg_C_1 306:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 405 SecStr :HHHHHHHHHHHHHTTSS GGGSEEEEEEEEETTEEEEEEEEEEETTTEEEE SS SEES HHHHHHHHH HHHHHHTSEE TT SS EEEESSSS: ExpBur :bbbbbbbbbbbbbbebbeeebbbebeeebebeeeeebbbbbbbbebbbbbebeeeeeeeeeeeebbebbbebbbbeeeeeeeebebeebebebebbeeee: queryA 405:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 504 :****************************************************************************************************: 7dfg_C_1 406:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 505 SecStr : B EE HHHHHHHHHTT S TT S B B TTHHHHHHGGGGG HHHHHHHHHHHHHTTSS TTS S SSB T: ExpBur :eeeeebeeeeebeebeebbeeeebbeeebebeeebebeeeeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbebebeebebeeeeeebbb: queryA 505:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 604 :****************************************************************************************************: 7dfg_C_1 506:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 605 SecStr :TGGGT BHHHHHHHS HHHHHHHHHHHTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHTT SSSSB TT STTTHHHHHHHH: ExpBur :bbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebbeeeebebebebbbbbbbbbebbbbebbeebeeeeebbbbbebebeebbbeebbee: Contact : b b queryA 605:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 704 :****************************************************************************************************: 7dfg_C_1 606:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 705 SecStr :HTTT SSEEEEE TTHHHH HHHHHHHHHHHHTT TTTS HHHHHHHHHHHHHHTTS EEESSSEEEE SS TT TTHHHHHHHHHHHHHHHHHH: ExpBur :bbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbb: Contact : bb queryA 705:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 804 :****************************************************************************************************: 7dfg_C_1 706:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 805 SecStr :HHHHTS TTS HHHHHHHHHHHHHHHS S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS HHHHHHHHHHTT GGG EEES : ExpBur :bbbbbbebeebeeeebeebbbebbebbbeeeeeeeebbebbeebbeebbbbbbebeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbebee: queryA 805:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 904 :******************************************************************************************** : 7dfg_C_1 806:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTXXXXXXXX: 905 SecStr :TTS S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEESSGGGG SSS SHHHHHHHHHTSGGGGSS HHHHHHHHHHHHHHHHHHHHH --------: ExpBur :beebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebebeeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeee--------: queryA 905:VMLTNDNTSRYWEPEFYEAMYTPHT: 929 : ******************: 7dfg_C_1 906:XXXXXXXTSRYWEPEFYEAMYTPHT: 930 SecStr :------- GGGGSTHHHHGGGSS : ExpBur :-------eeeebeeeebeebbeeee: |