#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (A) | polymer(polypeptide(L)) [908 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | D 1 (B) | polymer(polypeptide(L)) [117 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 272K 273Y 323P 324T 326F 328P 329L 330V 331R 332K 338V 339P 341V 368F 371L 378P 379A 380M 381H 382A 383A 384S 385G 386N 387L 388L 389L 390D 391K 392R 396F 398V 400A 402T 403N 405V 407F 447N 509W 514L 515Y 517D 518S 523D 666M (identity: 100.0 %/98.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dfg_C_1 identity=98.2% |
queryA 5:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 104 :****************************************************************************************************: 7dfg_C_1 6:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 105 SecStr : HHHHHHHTTS EEEESSSTTS EEEEEEEE SS EEEEEEEE SEEEEEEE TT EEEEEEEEEE HHHHHHHHHHHHHSTT TTB EEEEEE: ExpBur :eebbeebbeeeebebeeeeeeeeeeebebbbbeeeeebbbbbebeeeebbbbbbeeeeeeeeebbbbbbbeeeebbeebeebbeebeebebbbebbbbee: queryA 105:RIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 204 :*** ***********************************************************************************************: 7dfg_C_1 106:RIDXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 205 SecStr : -- EEEEEEEEE SSBHHHHHHHHHS TTS SHHHHHHHHTTSS GGGTTSTTSS TTT TTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTEEEE: ExpBur :eee--eebbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbbebbeebbebbeebbebbebbeebbbebe: queryA 205:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 304 :****************************************************************************************************: 7dfg_C_1 206:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 305 SecStr : GGGBBSS B TT EE TT EE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B SS HHHHHHHHHHH TT S SSGGG SSH: ExpBur :bbbbbbbbebbbbebbebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbebbeebbeebbebbebebbbbbeebeeb: Contact : bbbb queryA 305:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 404 :****************************************************************************************************: 7dfg_C_1 306:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 405 SecStr :HHHHHHHHHHHHHTTSS GGGSEEEEEEEEETTEEEEEEEEEEETTTEEEE SS SEES HHHHHHHHH HHHHHHTSEE TT SS EEEESSSS: ExpBur :bbbbbbbbbbbbbbebbeeebbbebeeebebeeeeebbbbbbbbebbbbbebeeeeeeeeeeeebbebbbebbbbeeeeeeeebebeebebebebbeeee: Contact : bb b bbbbb bb b b b bbbbbbbbbbbbbbb b b b bb queryA 405:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 504 :****************************************************************************************************: 7dfg_C_1 406:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 505 SecStr : B EE HHHHHHHHHTT S TT S B B TTHHHHHHGGGGG HHHHHHHHHHHHHTTSS TTS S SSB T: ExpBur :eeeeebeeeeebeebeebbeeeebbeeebebeeebebeeeeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbebebeebebeeeeeebbb: Contact :b b b queryA 505:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 604 :****************************************************************************************************: 7dfg_C_1 506:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 605 SecStr :TGGGT BHHHHHHHS HHHHHHHHHHHTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHTT SSSSB TT STTTHHHHHHHH: ExpBur :bbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebbeeeebebebebbbbbbbbbebbbbebbeebeeeeebbbbbebebeebbbeebbee: Contact : b bb bb b queryA 605:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 704 :****************************************************************************************************: 7dfg_C_1 606:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 705 SecStr :HTTT SSEEEEE TTHHHH HHHHHHHHHHHHTT TTTS HHHHHHHHHHHHHHTTS EEESSSEEEE SS TT TTHHHHHHHHHHHHHHHHHH: ExpBur :bbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbb: Contact : b queryA 705:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 804 :****************************************************************************************************: 7dfg_C_1 706:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 805 SecStr :HHHHTS TTS HHHHHHHHHHHHHHHS S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS HHHHHHHHHHTT GGG EEES : ExpBur :bbbbbbebeebeeeebeebbbebbebbbeeeeeeeebbebbeebbeebbbbbbebeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbebee: queryA 805:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 904 :******************************************************************************************** : 7dfg_C_1 806:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTXXXXXXXX: 905 SecStr :TTS S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEESSGGGG SSS SHHHHHHHHHTSGGGGSS HHHHHHHHHHHHHHHHHHHHH --------: ExpBur :beebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebebeeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeee--------: queryA 905:VMLTNDNTSRYWEPEFYEAMYTPHT: 929 : ******************: 7dfg_C_1 906:XXXXXXXTSRYWEPEFYEAMYTPHT: 930 SecStr :------- GGGGSTHHHHGGGSS : ExpBur :-------eeeebeeeebeebbeeee: |