#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [915 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | C 1 (B) | polymer(polypeptide(L)) [126 aa] | Non-structural protein 8 :R1AB_SARS2 | 269D 270L 271L 272K 273Y 323P 324T 326F 328P 329L 330V 331R 332K 339P 340F 341V 344T 368F 371L 372L 375A 378P 379A 380M 381H 382A 383A 384S 386N 387L 388L 389L 390D 391K 392R 396F 398V 402T 403N 407F 447N 505P 509W 514L 515Y 517D 518S 520S 521Y 522E 666M (identity: 100.0 %/98.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7btf_A_1 identity=98.5% |
queryA 4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103 :****************************************************************************************************: 7btf_A_1 4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103 SecStr : HHHHHHHHTTS S EE SSS S EEEEEESSS EEEEEE EEEEE TTS EEEEEEEEEE HHHHHHHHHHHHHHTT TTB EEEEE: ExpBur :eeebbeebbeeebeebbeebeeeeebeeebbebeeeeebbbbbebebeebbbbbbeeeeeeeeebbbbbbebeeeebeebeebbeebeebebbbebebbe: queryA 104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203 :****************************************************************************************************: 7btf_A_1 104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203 SecStr :EESSSSEEEEEEEEEE SSBHHHHHHHHHS TTS HHHHHHHHHTTSS TTGGGSTTTT SSSSTTHHHHHTTSHHHHHHHHHHHHHHHHHHHTTTEEE: ExpBur :eeeeeeebbbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbbebbeebbebbebbbebbeebeebbbeb: queryA 204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303 :****************************************************************************************************: 7btf_A_1 204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303 SecStr :E GGGBBTTS B SS EE STT EE HHHHHHHTHHHHHTTGGGGGGBTTS TTS B TT HHHHHHHHHHHSTT S SSGGG SS: ExpBur :ebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbeebee: Contact : bbbbb queryA 304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403 :****************************************************************************************************: 7btf_A_1 304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403 SecStr :HHHHHHHHHHHHHHGGGS GGGSB EE EETTEE EE EEEETTTEEEE S SSB HHHHHHHHH HHHHHHSSEE TT SS EEEESSS: ExpBur :bbbbbbbbbbbbbbbebbeeebbbebeeebebeeeebebbbbbbbebbbbbebeeeeeebeeeeeeeebbbebbbbebeeeeeebebeebebebebbeee: Contact : bb b bbbbb bbb b b bb b bbbbbbb bbbbbbb b b bb queryA 404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503 :****************************************************************************************************: 7btf_A_1 404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503 SecStr :S B EE HHHHHHHHHHTTT SS SS B B GGGHHHHHGGGGG HHHHHHHHHHHHHHT SS TTS TTS : ExpBur :eeeeeebeeebebeebeebbeeeebbeeeeebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbeebbeebebbebebeebeeeeeeeebb: Contact : b b queryA 504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603 :****************************************************************************************************: 7btf_A_1 504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603 SecStr :BTTTTT HHHHHHHS HHHHHHHHHHHTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHHT SSSB S STTTHHHHHHH: ExpBur :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeeebeeeebebebbbbbbbbbbbbbbbbebbeebeeeeeebbbbebebbbbbbbebbe: Contact : b b bb bb bbb queryA 604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703 :****************************************************************************************************: 7btf_A_1 604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703 SecStr :HHTSS SSEEEEE TTHHHH HHHHHHHHHHHHTT SSS HHHHHHHHHHHHHHHTS EEEETTEEEE S TT SSHHHHHHHHHHHHHHHHH: ExpBur :ebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbebeeebeeeebbbbbbbbbbbbbbbbbbbebbbbebebbbbeebebbebbbbbbbbbbbbbbb: Contact : b queryA 704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803 :****************************************************************************************************: 7btf_A_1 704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803 SecStr :HHHHHTS TTT HHHHHHHHHHHHHHHS S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHHHS TTS EEES: ExpBur :bbbbbbbbbeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbebe: queryA 804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903 :********************************************************************************************* : 7btf_A_1 804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTXXXXXXX: 903 SecStr : TTS S BTTBEEEEEESSS EEEEEE HHHHHHHHHEE SSSSS SHHHHHHHHHHHHHTSGGGG SSHHHHHHHHHHHHHHHHHHHHH -------: ExpBur :ebeebbeebeebbbbebebeeeebbbbbbebbebbbbbbbbeeebeeeeeebbeebbebbbebbbbeebeeeebbebbebbbebbeebeeeee-------: queryA 904:SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ: 932 : **********************: 7btf_A_1 904:XXXXXXXNTSRYWEPEFYEAMYTPHTVLQ: 932 SecStr :------- S TTSTHHHHGGG TT : ExpBur :-------eeeeeeeeebbebbbbeeeeee: |