#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [860 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [108 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 273Y 323P 324T 325S 326F 328P 329L 330V 331R 332K 338V 339P 340F 341V 344T 368F 371L 372L 375A 378P 379A 380M 381H 382A 383A 384S 386N 387L 388L 389L 391K 392R 398V 400A 402T 403N 405V 407F 509W (identity: 100.0 %/93.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7thm_A_1 identity=93.2% |
queryA 6:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 105 :********************************************* ******* **************************************** : 7thm_A_1 6:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKXXXCRFQEKDXXXNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKXX: 105 SecStr : HHHHHSSSS EEE SBTTB EEEEEEESSS EEEEEEE --- EEEE --- EEEEE EEE HHHHHHHHHHHHHHTTSTTS EEE --: ExpBur :ebeeebbeebeeebeeeeeeeeeeeeebbbbeeeeebbbbbbbee---bbbbbee---eeebbbbbbbeeeeeebeebeebbeebeebebbbebebbe--: queryA 106:IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 205 : ***********************************************************************************************: 7thm_A_1 106:XXXXXVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 205 SecStr :----- EEE SB SSBHHHHHHHHHS TTS HHHHHHHHHTTSS GGGGGSSS S SSS THHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT BEE : ExpBur :-----ebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebebbbebeebbebbeebbeebbebbbebbebbbbbeebbbebbb: queryA 206:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR: 305 :******************* ******************************** ********************************************: 7thm_A_1 206:TLDNQDLNGNWYDFGDFIQXXPGSGVPVVDSYYSLLMPILTLTRALTAESHVDXXXTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR: 305 SecStr : GGGSBSSS TT B -- EE HHHHHHHTHHHHHTTTTSGGGB --- B TT HHHHHHHHHHH TT S SSGGG SSHH: ExpBur :bbbbbbbebbbbebbebee--eeebebebbbbbbbbbbbbbbbebbebbbeee---eeeeeebeeeeeebbeebeebbeebbebbeeebbbbbeebeebb: Contact : bb b queryA 306:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV: 405 :********************************************************** **************************************: 7thm_A_1 306:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSXXXXFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV: 405 SecStr :HHHHHHHHHHHHTTSS TTTSB EE EETTEE EE EEE SSS EEE SS S ---- HHHHHHHH HHHHHHTSB SS S EEEESSSS : ExpBur :bbbbbbbbbbbbbebbeeebbbbbeeebeeeeeeeebbbbbbbebbbbbebeeeeeee----eeeebbeebbbbebeeeeeebebeebebebebbeeeee: Contact : bbbb bbbbb bbbb b b bb b bbbbbbb bbbb bb b b bb b queryA 406:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP: 505 :****************************************************************************************************: 7thm_A_1 406:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP: 505 SecStr : B B B HHHHHHHHHTT S TT S B B SBTHHHHHGGGGG HHHHHHHHHHHHHHGGG TTT S HH: ExpBur :eeeebeeeeeeeebeebbeeeebbeeebebeeebebeeeeeebbbebbbebebbbebbbbbbbbbbbbbbbbbbbeebeebbbeeeebeeeeeeeebbbb: Contact : b queryA 506:FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV: 605 :************** **********************************************************************************: 7thm_A_1 506:FNKWGKARLYYDSMXXXXQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV: 605 SecStr :HHTT HHHHHTT ---- HHHHHHHTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHHT SSSB TT STTTHHHHHHHHH: ExpBur :beeeeebeebbeee----eeebbebbbebbbbbbbebebeeeebeeeebebebbbbbbbbbbbbbbbbebbebbeeeeebbbbbebebeebbbbebbeeb: Contact : b queryA 606:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN: 705 :****************************************************************************************************: 7thm_A_1 606:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN: 705 SecStr :TS SS B TTHHHHS HHHHHHHHHHHTTT TTTS HHHHHHHHHHHHHHHTS EEE SSEEEE S TTSTTHHHHHHHHHHHHHHHHHHH: ExpBur :eeebeeeebbbbebeebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbebbebebbbbbbbbbbbbbbbbbb: queryA 706:ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL: 805 :********* *****************************************************************************************: 7thm_A_1 706:ALLSTDGNKXXDKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL: 805 SecStr :HHHHS TT -- HHHHHHHHHHHHHHT S HHHHHHHHHHHHHHEEEEEETTEEEEEE HHHHHHTSS HHHHHHHHHHHHS GGG T: ExpBur :bbbbebbee--eeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbeebbeeebbbeeebbbbbbbbbbbbbbeeeebbeeeeb: queryA 806:TKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV: 905 :***************** ********************** ************************************* : 7thm_A_1 806:TKGPHEFCSQHTMLVKQXXXYVYLPYPDPSRILGAGCFVDDIXXXXXXXMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLXXXXXXXXXXXXXX: 905 SecStr :TS S SSS EEEEE --- EEEEE HHHHHHHHHB ------- THHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHH --------------: ExpBur :eebbeebeebbbbebee---ebbbbbbebbebbbbbbbeeee-------eeeebeebbbbbbbbeebeeeebbebbebbbebbeee--------------: queryA 906:MLTNDNTSRYWEPEFYEAMYTPH: 928 : ************: 7thm_A_1 906:XXXXXXXXXXXEPEFYEAMYTPH: 928 SecStr :----------- HHHHHHTTS : ExpBur :-----------eeeebeebbeee: |