#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [906 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [114 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 273Y 274D 323P 324T 326F 328P 329L 330V 331R 332K 338V 339P 340F 341V 344T 365R 368F 371L 374Y 379A 380M 382A 383A 384S 385G 386N 387L 388L 389L 390D 391K 392R 396F 398V 400A 402T 403N 404N 405V 407F 447N 508K 509W 514L 515Y 518S 666M (identity: 100.0 %/97.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7doi_A_1 identity=97.8% |
queryA 4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103 :****************************************************************************************************: 7doi_A_1 5:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 104 SecStr : HHHHHHHHGGG EEESSSTTS EEEEEEEE SS EEEEEEEE SEEEEEEE TTS EEEEEEEEE SHHHHHHHHHHHHHTT TTB EEEEE: ExpBur :eeebbeebbeeeebebeeebeeeeeeebebbbbeeeeebbbbbbbeeeebbbbbbeeeeeeeeeebbbbbbeeeebbeebeebbeebeebebbbebbbbe: queryA 104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203 :**** **********************************************************************************************: 7doi_A_1 105:FRIDXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 204 SecStr :E -- EEEEEEEEE SSBHHHHHHHHHS TTS HHHHHHHHHTTSS GGGGGSTT S TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTEEE: ExpBur :beee--eebbbbbbebbebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbebbeebbbeb: queryA 204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303 :****************************************************************************************************: 7doi_A_1 205:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 304 SecStr :E GGGBBTT B TT EE TT EE HHHHHHHHHHHHHTTTTGGGGBGGG TTS B TT HHHHHHHHHHH TT S SSGGG SS: ExpBur :ebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbebbeebbeebbebbeeebbbbbeebee: Contact : bb bb queryA 304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403 :****************************************************************************************************: 7doi_A_1 305:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 404 SecStr :HHHHHHHHHHHHHHTTTS TTSSEEEEEEEEETTEEEEEEEEEEETTTEEEE S SEES HHHHHHHHH HHHHHHHSEE S SS EEEESSS: ExpBur :bbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeeebebbbbbbbbebeeeeeebebeebebebebbeee: Contact : bb b bbbbb bbbb b b b b b bb bbbbbbbbbbb b b b bb queryA 404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503 :****************************************************************************************************: 7doi_A_1 405:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 504 SecStr :S B EE HHHHHHHHHTT S TT S B B TTHHHHHHGGGGS HHHHHHHHHHHHHHTTT STT S SSS : ExpBur :eeeeeebeeeeebeebeebbeeeebeeeebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeeeeeebb: Contact :bb b b queryA 504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603 :****************************************************************************************************: 7doi_A_1 505:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 604 SecStr :TTGGGT HHHHHHHS HHHHHHHHHHTTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHHT SSSB TT STTTHHHHHHH: ExpBur :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebeeeeebebebebbbbbbbbbebbbbebbeebeeeeebbbbbeeebeebbbbebbe: Contact : bb bb b queryA 604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703 :****************************************************************************************************: 7doi_A_1 605:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 704 SecStr :HHSSS SSEEEEE TTTTTS HHHHHHHHHHHGGG TTT HHHHHHHHHHHHHHHTS EEESSSEEEE SS TTSTTHHHHHHHHHHHHHHHHH: ExpBur :ebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbebebbbbeebebbebbbbbbbbbbbbbbb: Contact : b queryA 704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803 :****************************************************************************************************: 7doi_A_1 705:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 804 SecStr :HHHHHSS GGG HHHHHHHHHHHHHHHT S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHTTS TTS EEES: ExpBur :bbbbbbbbbeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbebe: queryA 804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903 :******************************************************************************************** : 7doi_A_1 805:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXX: 904 SecStr : TTS S BTTEEEEEEEETTEEEEEEEE HHHHHHHHHEESSTTSSSSSSHHHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHS --------: ExpBur :ebeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeebeeeeebbeebbebbbebbbbeeeeeeebbebbebbbebbeebeeee--------: queryA 904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929 : ****************: 7doi_A_1 905:XXXXXXXXXXRYWEPEFYEAMYTPHT: 930 SecStr :---------- SSTHHHHTTTSS : ExpBur :----------eeeeeebbeebbeeee: |