#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [908 aa] | RNA-directed RNA polymeras :R1AB_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [114 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 273Y 323P 324T 326F 328P 329L 330V 331R 332K 338V 339P 340F 341V 368F 371L 372L 375A 378P 379A 380M 381H 382A 383A 384S 385G 386N 387L 388L 389L 390D 391K 392R 396F 398V 402T 403N 404N 405V 407F 447N 506F 508K 509W 514L 518S 666M (identity: 100.0 %/98.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dfh_A_1 identity=98.2% |
queryA 5:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 104 :****************************************************************************************************: 7dfh_A_1 6:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 105 SecStr : HHHHHHHTTS EEEESSSTTS EEEEEEEEEESSS EEEEEEEEEEEEEEEEE TT EEEEEEEEE HHHHHHHHHHHTTTTTSTTB EEEEEE: ExpBur :eebeeebbeeeebebeeeeeeeeeeebebbbbeeeeebbbbbebeeeebbbbbbeeeeeeeeebbbbbbeeeeebbeebeebbeebeebebbbebebbee: queryA 105:RIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 204 :*** ***********************************************************************************************: 7dfh_A_1 106:RIDXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 205 SecStr : -- EEEEEE SB SSBHHHHHHHHHS TT HHHHHHHHHTTSS GGGGGSSS S TTT TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEE: ExpBur :eee--eebbbbbbebbbbbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbbebbebbebbeebbbebb: queryA 205:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 304 :****************************************************************************************************: 7dfh_A_1 206:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 305 SecStr : GGGBBTTS B SS EE STT EE HHHHHHHHHHHHHTTGGGGGGBTTS TTS B TT HHHHHHHHHHHSTT S SSGGG SSH: ExpBur :bbbbbbbbebbbbebbebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbebbeebbeebbebbeeebebbbeebeeb: Contact : bb b queryA 305:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 404 :****************************************************************************************************: 7dfh_A_1 306:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 405 SecStr :HHHHHHHHHHHHHTTTS TTS EEEEEEEEETTEEEEEEEEEEETTTEEEE S SEES HHHHHHHHH HHHHHHHSB TT SS EEEESSSS: ExpBur :bbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeebeebeebbbebbbbeeeeeeeebebeebebebebbeeee: Contact : bb b bbbbb bbbb b bb b bbbbbbbbbbbbbbb b b bbb queryA 405:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 504 :****************************************************************************************************: 7dfh_A_1 406:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 505 SecStr : B EE HHHHHHHHHTT S TT S B B TTHHHHHHGGGGG HHHHHHHHHHHHHTT S GGG S SSSB B: ExpBur :eeeeebeeeeebeebeebbeeeebbeeeeebebebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbbbbeebeebbbebeebeeeebeeebbb: Contact :b b b queryA 505:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 604 :****************************************************************************************************: 7dfh_A_1 506:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 605 SecStr :TGGGT BHHHHHHHS HHHHHHHHHHHTTS B EEEE BSSS EEEE HHHHHHHHHHHHHHHHHHHH SSSB TT STTTHHHHHHHH: ExpBur :bbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebeeeeeeebebebbbbbbbbbebbbbebbebbbeeeebbbbbeeebeebbbeebbee: Contact : b bb b b queryA 605:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 704 :****************************************************************************************************: 7dfh_A_1 606:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 705 SecStr :HSSS SSEEEEEE TTTTTS HHHHHHHHHHHHTT TTT HHHHHHHHHHHHHHTTS EEESSSEEEE S TT TTHHHHHHHHHHHHHHHHHH: ExpBur :bbeebeeeebbbbebeebbbbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbeebbbebebbbbeebebbebbbbbbbbbbbbbbbb: Contact : b queryA 705:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 804 :****************************************************************************************************: 7dfh_A_1 706:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 805 SecStr :HHHHTS SSS S SHHHHHHHHHHHHHHT SS TTHHHHHHHHHHHHEEEEE SS EEEEEEHHHHHTTSS HHHHHHHHHHHHS TTTSEEE : ExpBur :bbbbbbebeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbebebbbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbeeee: queryA 805:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 904 :******************************************************************************************* : 7dfh_A_1 806:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXX: 905 SecStr :SSS S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEESSGGGGSHHHHHHHHHHHHHHTGGGTTSSSHHHHHHHHHHHHHHHHHHHH ---------: ExpBur :eeebbeebeebbbbebebeeeebbbbbbebbebbbbbbbbeeeeeeeeeebbeebbebbbebbbbeebeeeebbebbebbbebbeebeeee---------: queryA 905:VMLTNDNTSRYWEPEFYEAMYTPHT: 929 : *******************: 7dfh_A_1 906:XXXXXXNTSRYWEPEFYEAMYTPHT: 930 SecStr :------ TTSTTSTHHHHTTSSS : ExpBur :------eeeeeeeeeebeebbeeee: |