#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [826 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [114 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 273Y 323P 324T 325S 326F 328P 329L 330V 331R 332K 338V 339P 340F 341V 368F 371L 375A 378P 379A 380M 381H 382A 383A 384S 385G 386N 387L 388L 389L 390D 391K 392R 396F 398V 400A 401L 403N 405V 407F 447N 506F 509W 514L 518S 666M (identity: 100.0 %/92.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7ctt_A_1 identity=92.0% |
queryA 31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA: 130 :******************** ***************** *************: 7ctt_A_1 31:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXRLTKYTMADLVYA: 130 SecStr : EEEEEEE SS EEEEEEE --------------------------------- GGGGSTTSTTB ----------------- SSBHHHHHHH: ExpBur :eeebbbbeeeebbbbbebee---------------------------------eebbeebeebebbbeee-----------------eeeebbbbbbbbb: queryA 131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230 :****************************************************************************************************: 7ctt_A_1 131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230 SecStr :HHS TTSTHHHHHHHTTTTSS GGGSSSTT S SSS TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEE GGGSBSSS B S EE TT : ExpBur :bbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbbebbbebbebbeebbebbebbeebbbebebbbbbbbbebbbeebeebeeeeeeeb: queryA 231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330 :****************************************************************************************************: 7ctt_A_1 231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330 SecStr : EE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B TT HHHHHHHHHHH TT S SSGGG SSHHHHHHHHHHHHHHTSSS TTS EEEE: ExpBur :ebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbbbbeeebbbbbeebeebbbbbbbbbbbbbbbebbbeebbbbbe: Contact : bb b bbbb bbb queryA 331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430 :****************************************************************************************************: 7ctt_A_1 331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430 SecStr :EEEEESSSEEEEEEEEE SSS EEE SS SEE S HHHHHHHHH HHHHHTSSEE TT SS EEEESSSS B EE HHHHHHHHTTT S : ExpBur :eebebeeeeeebbbbbbbebbbbbebeeeeeebeeeeebeebbbebbbbebeeeeeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebbe: Contact :bb bbbb b b b bbbbbbbbbbbbbbb b b bb b b b queryA 431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530 :****************************************************************************************************: 7ctt_A_1 431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530 SecStr :TT S B B TTSHHHHHGGGGG HHHHHHHHHHHHHHT SS GGG S TTTTTT HHHHHHHS HHHHHHHHHH: ExpBur :eeeebebebebeebeeebbbebbbebebbbebbbbbbbbbbbbbbbbebbeebebbbbebeeeebeeeeeebbbbbeeeeebeebbeebeeeebeebbeb: Contact : b b b b b queryA 531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630 :****************************************************************************************************: 7ctt_A_1 531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630 SecStr :HTTS EEEEEE BSSS EEEE HHHHHHHHHHHTTHHHHHTT SSSB TT STTTHHHHHHHHHHTT SSEEEEEE TTTTTS HHH: ExpBur :bbebbbbbbbbbebeeebeeeeebebebebbbbbbbbbebbbbebbebbeeeeebbbbbebebbebbbeebbeebbeebeeeebbbbebbebbbbbbbbb: queryA 631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730 :****************************************************************************************************: 7ctt_A_1 631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730 SecStr :HHHHHHHHHTT TTT HHHHHHHHHHHHHHHTS EEEETTEEEE S TTSTTHHHHHHHHHHHHHHHHHHHHHHTS GGG S HHHHHHHHHHHHH: ExpBur :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbbbbbeebeeeebeebbeebbeb: Contact : b queryA 731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830 :****************************************************************************************************: 7ctt_A_1 731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830 SecStr :HHS S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHTT TTS EEE SSS S SSS B EEESSSSEEE : ExpBur :bbeeeeeeeebbebbbebbeebbbbbbebebbbbbbbeebbeebbbbbbebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebbbbebebeeeebbbb: queryA 831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPH: 928 :************************************************************** **************: 7ctt_A_1 831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHXXXXXXXXXXXXXXXXXXXXXXYWEPEFYEAMYTPH: 928 SecStr :B HHHHHHHHHEESSSTTS SHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHH ---------------------- STTTTTTTSS : ExpBur :bbebbebbbbbbbbeeebeeeeeebeebbbebbbebbbbeebeeeeebebbebbbebbeeee----------------------eeeeeebeebbeee: |