#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [836 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [114 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 273Y 324T 326F 328P 329L 330V 331R 332K 340F 341V 368F 371L 375A 378P 379A 380M 381H 382A 383A 384S 385G 386N 387L 388L 389L 390D 391K 392R 396F 398V 400A 402T 403N 405V 407F 506F 509W 514L 518S 666M (identity: 100.0 %/92.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7bv1_A_1 identity=92.7% |
queryA 31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA: 130 :******************** ***************** **************: 7bv1_A_1 32:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXQRLTKYTMADLVYA: 131 SecStr : EEEEEE SS EEEEEE --------------------------------- GGGGGTTTSTTB ---------------- S BHHHHHHH: ExpBur :eeebebeeeeebbbbbebee---------------------------------eebbeebeebebbbeee----------------eeeeebbbbbbbbb: queryA 131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230 :****************************************************************************************************: 7bv1_A_1 132:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 231 SecStr :HHS SSS HHHHHHHHHTTSS GGGGGSSS S SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEEE GGGBBTTS B S EE STT : ExpBur :bbebeeeebebbeebbbebebbeeebbeeeebbbbeeeeebbebbeebbeebbebbeebbebbebbeebbbebbbbbbbbbbebbbeebeebeeeeeeeb: queryA 231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330 :****************************************************************************************************: 7bv1_A_1 232:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 331 SecStr :EEE HHHHHHHTHHHHHTTGGGGGGBTTS TTS B TT HHHHHHHHHHH TT S SSGGG SHHHHHHHHHHHHHHTTSS GGG EEEE: ExpBur :ebebbbbbbbbbbbbbbbebbebbebeeeeeeeeeeeeeeeeeebbebbeebbeebbebbeeebbbbbeebeebbbbbbbbbbbbbbbebbbeebbbbbe: Contact : bb b b b bbb queryA 331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430 :****************************************************************************************************: 7bv1_A_1 332:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 431 SecStr :EEEEETTEEEEEEEEEEETTTEEE SS SEE S HHHHHHHTTSHHHHHHHSEE SS S EEEESSSS B EE HHHHHHHHHTT S : ExpBur :eebebeeeeeebbbbbbbebbbbbebeeeeeebeeeeeeeebbbebbbbebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeeebeeeebee: Contact :bb bb b b b bbbbbbbbbbbbbbb b b b bb b b queryA 431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530 :****************************************************************************************************: 7bv1_A_1 432:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 531 SecStr :TT S B B TTHHHHHHGGGGG HHHHHHHHHHHHHHTTTS STT S TTTTTS HHHHHHHS HHHHHHHHHH: ExpBur :eebebeeebebeebebebebebbbbbebbeebbbbbbbbbbbbbbbbebbeebeebbbebeebeeeeeeeebbbbbeeeeebeebbeebeeeebeebbeb: Contact : b b b b queryA 531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630 :****************************************************************************************************: 7bv1_A_1 532:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 631 SecStr :HHHS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHTT SSSSB TT STTTHHHHHHHHHHSS SSEEEEE TTHHHH HHH: ExpBur :bbebbbbbbbebebeebbbeeeebebebbbbbbbbbbbebbbbebbebbeeeeebbbbbebebebbbbeebbeebbeebeeeebbbbebeebebbbbbbb: queryA 631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730 :****************************************************************************************************: 7bv1_A_1 632:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 731 SecStr :HHHHHHHHTTT SSSS HHHHHHHHHHHHHHHTS EEEETTEEEE S TT TTHHHHHHHHHHHHHHHHHHHHHHSS TTT HHHHHHHHHHHHH: ExpBur :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbebebeebeeeebeebbbebbeb: Contact : b queryA 731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830 :****************************************************************************************************: 7bv1_A_1 732:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 831 SecStr :HHT S HHHHHHHHHHHHHHEEEEE SS EEEEEEHHHHTTTSS HHHHHHHHHHHHS TTS EEES TTS S BTTBEEEEEEETTEEEEEE: ExpBur :bbeeeeeeeebbeebbebbeebbbbbbebebbbbbbbeebbeebbbbebebbbbbbbbbbbbbbeeeebbebeebeebbeebeebebbebebeeeebbbb: queryA 831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTV: 930 :***************************************************************** ******************* : 7bv1_A_1 832:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHTX: 931 SecStr :E HHHHHHHHHEE SSSTT SHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHH --------------- S SSTHHHHGGGSTT -: ExpBur :bbebbebbbbbbbbeeebeeeeeebbebbbebbbebbbbeeeeeeeebebbebbbebbeebeeee---------------eeeeeeeeebbeebbeeee-: queryA 931:LQ: 932 : *: 7bv1_A_1 932:XQ: 933 SecStr :- : ExpBur :-e: |