#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [801 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [114 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 272K 273Y 323P 324T 325S 326F 328P 329L 330V 331R 332K 338V 339P 340F 368F 371L 374Y 375A 378P 379A 380M 381H 382A 383A 384S 387L 388L 389L 390D 391K 392R 403N 405V 407F 506F 509W 514L 518S (identity: 100.0 %/97.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xqb_A_1 identity=97.4% |
queryA 31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQ-------------: 117 :******** ********* : 6xqb_A_1 32:VYRAFDIYXXXVAGFAKFLK-------------------------------------------------------------------XXXXXXXXXXXXX: 64 SecStr : EEEEEE --- EEEEEE --------------------------------------------------------------------------------: ExpBur :eebbbbee---ebbbbeeee--------------------------------------------------------------------------------: queryA 118:------------------------------------------------------RLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 163 : **********************************************: 6xqb_A_1 65:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 164 SecStr :------------------------------------------------------ SSBHHHHHHHHSS BTTB HHHHHHHHHTTS GGGGGSTTTT: ExpBur :------------------------------------------------------eebeebbbbbbbbbbbbebeebebbeebbeebebbeeeebeeeebe: queryA 164:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 263 :************************************************************** **********************************: 6xqb_A_1 165:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTXXXXGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 264 SecStr : SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTEE STT BTT S EE ---- THHHHHHSGGGTTTTGGGGGGBGGG TTS: ExpBur :bbbebeebeebbeebbeebbbbbeebbebbbebeeebbebebbbbebbbebebeeeeebeee----eebebbbbbbbbbbbbbbbebbebbebeeeeeee: queryA 264:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS: 363 :****************************************************************************************************: 6xqb_A_1 265:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS: 364 SecStr : B SS HHHHHHHHHHH TT SS SSGGG SSHHHHHHHHHHHTGGGSSS TTT EEEEEEEEESSSEEEEEEEEEETTTEEEE SS SEE: ExpBur :eeeeeeeeeeebeebbeebbbebbebbeeeebbbbeebeebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeee: Contact : bbbb bbbb bbbbb bbb queryA 364:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 463 :****************************************************************************************************: 6xqb_A_1 365:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 464 SecStr :SS HHHHHHHHS HHHHHTTS SS SS EEEESSSS HHHHHHHHTTS S TT S B TTHHHHHHGGGGG : ExpBur :eeeeebbebbbbbbbbeebeeeeebebeebebebebbeeeeeeeeeeeeeeebeebeebbeeeebbeeebebeeebebeeeebebebebbebbebbbebb: Contact : b b bb bbbbbbb bbbbbb b b b queryA 464:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 563 :****************************************************************************************************: 6xqb_A_1 465:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 564 SecStr : HHHHHHHHHHHHHHTTT GGG SS TGGGTT HHHHHHHS HHHHHHHHHHHTTS EEEEE BSSS EEE HH: ExpBur :bbbbbbbbbbbbbbbbbeebeebbbeeeebeeeebeeebbbbbeeeeebeebeeebeeeebeebbebbbebbbbbbbbbeeeeebeeeeebebebebbbb: Contact : b b b b queryA 564:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 663 :****************************************************************************************************: 6xqb_A_1 565:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 664 SecStr :HHHHHHHHHTTTTHHHHT TTSSB TT STTTHHHHHHHHHHSS SSEEEEE SSHHHH HHHHHHHHHHTTTT TTT HHHHHHHHHHHHHHTT: ExpBur :bbbbbbbbbbebbebbbeeeebbbbbebebeebebbebbeebbeebeeeebbbbebeeebbbbbbbbbbbbbbbbbbebeeebeeeebbbbbbbbbbbbb: queryA 664:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 763 :*********************************************** *************************************************: 6xqb_A_1 665:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTXXXXIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 764 SecStr :S EEESSSEEEE TT TTHHHHHHHHHHHHHHHHHHHHHHH ---- SHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHEEEEEETTEEE: ExpBur :bbbbbbebbbbebebbbbeebebeebbbbbbbbbbbbbbbbbbbbbe----eeeeebeebbeebbebbbeeeeeeeebbeebbebbeebbbbbbebebbb: queryA 764:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 863 :****************************************************************************************************: 6xqb_A_1 765:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 864 SecStr :EEEEHHHHHHTSS HHHHHHHHHHHTS TTT EEES TTS S SSS EEEEEEETTEEEEEEE HHHHHHHHHS SSSTTT STTHHHHHHHHH: ExpBur :bbbbeebbeebbbbebebbbbbbbbbbbbbbeeeebbeeeebeebbeebeebebbeeebeeeebbbbebebbebbbbbbbbeeeeeeeeeebeebbbebb: queryA 864:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPE: 919 :******************************** **************: 6xqb_A_1 865:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXMLTNDNTSRYWEPE: 920 SecStr :HTTGGGGGSS HHHHHHHHHHHHHHHHHHHH ---------- SSHHHHHTTS : ExpBur :eebbbbeeeeeebebebbebbbebbeebeeee----------eeeeeebebebeee: |