Protein Model on 6xhl_B_1_A_1 (TEMPLATE: 6xhl )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1A_SARS) B 1 (B) polymer(polypeptide(L)) [299 aa] 3C-like proteinase :R1A_CVHSA
2 b A 1 (A) polymer(polypeptide(L)) [301 aa] 3C-like proteinase :R1A_CVHSA 3244R 3245K 3246M 3247A 3248F 3249P 3250S 3251G 3254E 3355L 3362P 3363S 3364G 3365V 3366Y 3367Q 3368C 3377K 3378G 3379S 3381L 3526I 3530E 3538R 3542G (identity: 100.0 %/99.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6xhl_B_1 identity=99.3%
queryA      3242:GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKY:3341
                :****************************************************************************************************:
6xhl_B_1       3:GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKY: 102
SecStr          :         HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG  TGGGGS  HHHHHHT  GGG EEEETTEEE EEEEEEETTEEEEEESS  TT  EE:    
ExpBur          :ebeeeebebeebeebbbbbbbeebebbbbbbeebbbbbbbbbbeeeebeebebeebbeeeeeeebebbeeeeebebeeeeeeebbbebebeeebeebbee:    
Contact         :  bbbbbbbb  b                                                                                       

queryA      3342:KFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTIT:3441
                :****************************************************************************************************:
6xhl_B_1     103:KFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTIT: 202
SecStr          :EE    TT EEEEEEEETTEEEEEEEEE  TTS B     TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS  SSSS        B H:    
ExpBur          :eeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebebb:    
Contact         :             b      bbbbbbb        bbb b                                                            

queryA      3442:LNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS:3541
                :***************************************************************************  ***********************:
6xhl_B_1     203:LNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMXXRTILGSTILEDEFTPFDVVRQCS: 302
SecStr          :HHHHHHHHHHHHTT  TT  S    HHHHHHHHHHTTB    HHHHHHTHHHHHHHT  HHHHHHHHHHHHHH  --  BTTBSS   S  HHHHHHHHT:    
ExpBur          :bbbbbbbbbbbeeeeeebeeeeebeeeebbebbeeeebeebeeebbeebeebbeeeebebeebbbbbbebbeeee--eebeeeeeeebbbbbebbeeeee:    
Contact         :                                                                                    b   b       b   

queryA      3542:G:3542
                :*:
6xhl_B_1     303:G: 303
SecStr          : :    
ExpBur          :e:    
Contact         :b                                                                                                   


Input Residue Numbers for Focused Sites

ex) 2,15,123