#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | D 1 (A) | polymer(polypeptide(L)) [898 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (C) | polymer(polypeptide(L)) [63 aa] | Non-structural protein 7 :R1AB_SARS2 | 409T 411K 412P 413G 415F 420Y 429F 437L 440F 441F 442F 443A 444Q 445D 552N 843F (identity: 100.0 %/97.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7d4f_D_1 identity=97.2% |
queryA 6:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 105 :***************** ***************************************************************************: 7d4f_D_1 7:SFLNRVCGVSAARLTPCXXXXXXXXVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 106 SecStr : HHHHHHHS S EEE -------- EEEEEEE SS EEEEEEE S EEEEEE SSS EEEEEEEEEE HHHHHHHHHHHHHHTTSTTB EEEEEE : ExpBur :eeeeebeeebebebeee--------eebbebeeeeebbbbbebeeeeeebbbbeeeeeeeeeebbbbeebeeeebeebeebbeebeebebbbebebbebe: queryA 106:IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 205 :* ************************************************************************************************: 7d4f_D_1 107:IXXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 206 SecStr : --- EEEEEEEEE SSBHHHHHHHHHS TTS HHHHHHHHHTTSS GGGGGSTTSS TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEEE : ExpBur :e---eebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbebbeebbbebbb: queryA 206:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR: 305 :****************************************************************************************************: 7d4f_D_1 207:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR: 306 SecStr : GGGBBTTS B TT EE STT EE HHHHHHHHHHHHHTTTTSGGGBGGG SSS B TT HHHHHHHHHHH TT S SSGGG SSHH: ExpBur :bbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbebebbbbbeebeebb: queryA 306:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV: 405 :****************************************************************************************************: 7d4f_D_1 307:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV: 406 SecStr :HHHHHHHHHHHHTTTS GGG EEEEEEEEETTEEEEEEEEEEETTTEEEE S SEES HHHHHHHHHSHHHHHHSSEE SS SS EEEESSSS : ExpBur :bbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeebbebbbebbbbebeeeeeebebeebebebebbeeeee: queryA 406:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP: 505 :****************************************************************************************************: 7d4f_D_1 407:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP: 506 SecStr : B EE HHHHHHHHHTT TTSS B B TTHHHHHHGGGGG HHHHHHHHHHHGGGGTT GGG S TTS TG: ExpBur :eeeebeeeeebeebeebbeeeebbeeeeebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeeeeeebbbb: Contact : b bbb b b b b bbbbbb queryA 506:FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV: 605 :****************************************************************************************************: 7d4f_D_1 507:FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV: 606 SecStr :GGGS HHHHHHHS HHHHHHHHHHTTTS EEEEEEE BSSS EEEEE HHHHHHHHHHHHHHHHHHTT SSSB TT STTTHHHHHHHHH: ExpBur :beeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeeeeeeeebebebbbbbbbbbbbbbbbbebbebbeeeeebbbbbebebeebbbeebbeeb: Contact : b queryA 606:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN: 705 :****************************************************************************************************: 7d4f_D_1 607:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN: 706 SecStr :SSS SSEEEEE TTHHHH HHHHHHHHHHHHTT TTT HHHHHHHHHHHHHHHTS EEE SSEEEE S TT TTHHHHHHHHHHHHHHHHHHH: ExpBur :beebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbeebbbebebbbbebbebbebbbbbbbbbbbbbbbbb: queryA 706:ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL: 805 :****************************************************************************************************: 7d4f_D_1 707:ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL: 806 SecStr :HHHTS GGG HHHHHHHHHHHHHHHT S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS HHHHHHHHHHHHS TTS EEE S: ExpBur :bbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeebbbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbeeeeb: queryA 806:TKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV: 905 :****************************************************************************************** : 7d4f_D_1 807:TKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXX: 906 SecStr :SS S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEE HHHHH HHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHT ----------: ExpBur :eebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeebeeeeeebbeebbebbbebbbbeeeeeeeebebbebbbebbeebeeee----------: Contact : b queryA 906:MLTNDNTSRYWEPEFYEAMYTPHT: 929 : *******************: 7d4f_D_1 907:XXXXXNTSRYWEPEFYEAMYTPHT: 930 SecStr :----- TTSHHHHHGGGSS : ExpBur :-----eeeeeeeeeebeebbeeee: |