#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [927 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [186 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 273Y 323P 324T 325S 326F 328P 329L 330V 331R 332K 338V 339P 340F 341V 344T 368F 371L 374Y 378P 379A 381H 382A 383A 384S 385G 386N 387L 388L 389L 390D 391K 392R 396F 398V 400A 403N 404N 405V 407F 447N 509W 514L 517D 518S 523D 666M (identity: 100.0 %/100.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7krn_A_1 identity=100.0% |
queryA 3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102 :****************************************************************************************************: 7krn_A_1 3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102 SecStr : TTHHHHHHH SS EEEESSSSSS EEE EEESSS EEE EEE EEEE GGG EEEEEE B HHHHHHHHHHHHHS SSSSS EEEE: ExpBur :eeeebbeebbeeeebebeeeeeeeeebebebbebeeeeebbbbbbbebeebbbbbbeeeeeeeeebbbbbbbeeeebbeebeebbeebeebebbbebbbb: queryA 103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202 :****************************************************************************************************: 7krn_A_1 103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202 SecStr :EEE SSSEEEEEEE SB SSBHHHHHHHHHS TTS STTHHHHHHTTSS SSGGGSTTSS SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTEE: ExpBur :ebebeeeeebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbeebeebbbe: queryA 203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302 :****************************************************************************************************: 7krn_A_1 203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302 SecStr :EE GGGBBTTS B SS EE STT EEE TTTTTTSTTHHHHTTTTSTTSBGGG TTS B TT HHHHHHHHHHSSTT SS SSGGG : ExpBur :bbbbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbeebeeebebbbeebe: Contact : bb b queryA 303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402 :****************************************************************************************************: 7krn_A_1 303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402 SecStr :STTHHHHHHHHHHHHTTSS GGG S EEEEEETTEEEEEE EEE SSS EEE S TTB HHHHHHHHHSHHHHHHTSB SS SS BBSS: ExpBur :ebbbbbbbbbbbbbbbebbeeebbbbbeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeeeeebbbebbbbebeeeeeebebeebebebebbee: Contact : bbbb bbbbb bbbb b b b b bb bbbbbbbbbbbb b b b queryA 403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502 :****************************************************************************************************: 7krn_A_1 403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502 SecStr :SS B B HHHHHHHHHTT S TT SS B B SBTHHHHGGGGGG HHHHHHHHHHHHHHT S GGG S S : ExpBur :eeeeeeebeeeeebeebeebbeeeebbeeebebeeebebeebeeebbbebbbebebbbebbbbbbbbbbbbbbbbbbbeebebbebebeebebeeeeeeb: Contact :bbb b b queryA 503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602 :****************************************************************************************************: 7krn_A_1 503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602 SecStr :TTTTTTT HHHHHHHS HHHHHHHHHHHTSS EEEEEE S BSSSS EEEEE HHHHHHHHHHHHHHHHHGGG SSSB S STTTTHHHHH: ExpBur :bbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebbeeeebebebebbbbbbbbbebbbbebbebbeeeeebbbbbebebeebbbbebb: Contact : b b bb b queryA 603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702 :****************************************************************************************************: 7krn_A_1 603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702 SecStr :HHHSSS SSEEEEE TTHHHH HHHHHHHHHHTTSS SSSS SHHHHHHHHHHHHHTTS EEE SSSEEE SS TTSSSSHHHHHHHHHHHHHHH: ExpBur :eebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbb: Contact : b queryA 703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802 :****************************************************************************************************: 7krn_A_1 703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802 SecStr :HHHHHHTS STT TTHHHHHHHHHHHHTS S HHHHHHHHHHHHHHS EEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHTS S TTS EEE: ExpBur :bbbbbbbbebeebeeeebeebbeebbebbbeeeeeeeebbeebbebbeebbbbbbbbeebbbbbbeebbeebbbbbbebbbbbbbbbbbbbbeeeebbeb: queryA 803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902 :****************************************************************************************************: 7krn_A_1 803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902 SecStr :S STT S BTTBEEEEEEETTEEEEEEE TTHHHHHHH SSTTGGGSTT STTHHHHHHHHGGGTTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :eeeeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebebbeebebbbebbbebbbbeebeeeeebebbebbbebbeebbeebeeeeeee: queryA 903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929 :***************************: 7krn_A_1 903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929 SecStr :SSS SS SSTTSHHHHHGGGSTT : ExpBur :eeeeeeeeebeebbeeebbeebbeeee: |