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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | E 1 (E) | polymer(polypeptide(L)) [593 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | W 1 (W) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 432R(M) 434L(Y) 447Q(S) 448V(L) 450T(N) (identity: 0.0 %/31.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6om1_E_1 identity=31.7% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 6om1_E_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSEEEEE SSSSS EEEEEETTHHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSSSS EEE-EE TT EEE TTS EEE BEE: ExpBur :ebbebbbebebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebbbbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb: Contact : b b bb b queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** **: 6om1_E_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406 SecStr :EEEEE TTSSEEEEEEE SSTT--S BTSEEEEEESTT SSS EEEEEETT SGGG EEEEEEEETTEE SS SEEEE ------- SSS TT: ExpBur :bbbbbeeeeebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbeeeeebbbbbbbbeeebbeeebbbebeb-------ebeeeeeeebbbb: queryA 583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVANLTYTLQLDGH: 680 : * * * * * *** * *** * ** * * * * * * : 6om1_E_1 407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTXXKVSCFNVRFCLKADG-----KGVLPRKLNFQVELLLD: 501 SecStr :SEEEEEE TT SSS EEEEEEGGGTEEEEEEE EEEEEEEEEEESSB TTT B TT -- B EEEEEEEEEEEE-----SSS SEEEEEEEEEE : ExpBur :ebbebebebbebebbbbbbbbbbbbbbbbbbbbbbbebeeebebeeeebebeeeebeeeee--ebbbbebebbbebeb-----eeebeeebebebbbebb: queryA 681:RTR-----RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 6om1_E_1 502:KLKXXXAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564 SecStr : --- EEETTT SSEEEEEEEEETTS EEEEEEEEE GGG SS EEEEEEEEE: ExpBur :eee---eeebbbbbeeeeeebeeebebebeeeeebeebebbbeeeeebebeeeebbbbbebeb: |