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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | E 1 (E) | polymer(polypeptide(L)) [587 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | S 1 (S) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 626P 628E(I) 633E(N) 635E(T) 647G(C) 648V(F) 649N 709D(E) (identity: 25.0 %/32.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5ffo_E_1 identity=32.4% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 5ffo_E_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSEEEEE SSSSS EEEEEETTHHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSS EEE-EEETT EEE TTS EEE EE: ExpBur :ebbbbbbbbebeeeeeebbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeebbbbb: queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** **: 5ffo_E_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406 SecStr :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESTT SSS EEEEEETT TGGG EEEEE EETTEE SS SEEEE ------- SSS TT: ExpBur :bbbbbeeeeeeeeeebebeeee--bebbbbbbbbbbbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbbeeeebebeb-------ebeeeeeeebbbb: queryA 583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLD: 678 : * * * * * *** * *** * ** * * * * * * **: 5ffo_E_1 407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPXXXXKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLD: 501 SecStr :SEEEEEE TT SSS EEEEEEGGGTEEEEE B EEEEEEEEEEE SS SS B S ---- BEEEEEEEEEEEESSS S-----EEEEEEEEEES: ExpBur :ebbebebebbebebbbbbbbbbbbbbbbbbbbbbbbebeeebebeeeeeeeeeeebeee----ebbbbebebbbebebeeebee-----ebebebebebb: Contact : b b b b bbb queryA 679:GHRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 5ffo_E_1 502:KLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564 SecStr :TTS TTS EEETTT SSEEEEEEEEESSS EEEEEEEEE GGG S SS EEEEEEEE: ExpBur :eebeeeeeebbbbbeeeeeeeeeebebeeeeeeeeeeeebbbeeeeebeeeeeebbbbbebeb: Contact : b |