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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [596 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | M 1 (M) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 413S(N) 437Q(D) 444H(N) 446S 447Q(S) 448V(L) (identity: 16.7 %/32.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6om2_C_1 identity=32.4% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 6om2_C_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSEEEEE SSSSSS EEEEEETTTTTTT EEEEE ----TTT EEEEEE SSTTS TTSSEEEE SSSSS EEE-EEETT B TTS B EE: ExpBur :ebbbbbbebebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeebbbbb: Contact : b b b bbb queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** **: 6om2_C_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406 SecStr :EEEEE SSSSEEEEEEE SSTT-- TTS EEEEE TT SSS EEEEEETT SGGG EEEEE EETTEE SS SEEEE ------- SSS TT: ExpBur :bbbbbeeeeebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbbeebbbebeb-------ebeeeeeeebbbb: queryA 583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLD: 678 : * * * * * *** * *** * ** * * * * * * **: 6om2_C_1 407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLD: 501 SecStr :SEEEEEE TTSSSS EEEEEEGGGTEEEEE B EEEEEEEEEEE SEE TT SB TTSS B EEEEEEEEEEEESSS S-----EEEEEEEEEES: ExpBur :ebbebebebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeebebeeeeeebbbbebebbbebebeeebee-----ebebebebebb: queryA 679:GHRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 6om2_C_1 502:KLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564 SecStr :TT TTS EEETTT SSEEEEEEEEETTS EEEEEEEEE GGG SS EEEEEEEEE: ExpBur :eebeeeeebbbbbbeeeeeeeeeebebeeeeeeebeebebbbeeeeebeeeeeebbbbbebeb: |